View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19209_high_3 (Length: 584)
Name: NF19209_high_3
Description: NF19209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19209_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 5 - 448
Target Start/End: Complemental strand, 40780438 - 40779993
Alignment:
| Q |
5 |
gagcagcacagagaacatgttaaagatgggattgtgatatactgatatattatgattttggagttcc-gccctgaccatttgggagcaatagttgtcacc |
103 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
40780438 |
gagcagcacaaagaacatgttaaagatgggattgtgatatactgatatattatgattttggagttcccgccctgaccatttgggagcaatagttgtcacc |
40780339 |
T |
|
| Q |
104 |
tttagtacatttct---aagaaaaannnnnnnnnnnngactcgggaaataatgta--ctcatggatgacgtaagttattccaaattaaaggagacactat |
198 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40780338 |
tttagtacatttctggaaagaaaaaacacacacac--gactcgggaaataatgtaaactcatggatgacgtaagttattccaaattaaaggagacactag |
40780241 |
T |
|
| Q |
199 |
gtaagtgtagatactcattcaataaaaaatgattcaagtgatgcaattagactatggtaaatagcaagaagctctgcattctgcatggctattatagtta |
298 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40780240 |
gtcagtgtagatactcattcaataaaaaatgattcaagtgatgcaattagactatggtaaatagcaagaagctctgcattctgcatggctattatagtta |
40780141 |
T |
|
| Q |
299 |
ttattagacaaatgtacccaaaagctttacctaggttcttaaattgctgccaactatacactgagatttgagaataattttgattgttttaagtttttaa |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40780140 |
ttattagacaaatgtacccaaaagctttacctaggttcttaaattgcttccaac--tacactgagatttgagaataattttgattgttttaagtttttaa |
40780043 |
T |
|
| Q |
399 |
ccagctataaagtaacatgccaaaatctctccccacacggtgtggttggc |
448 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40780042 |
ccaaatataaagtaacatgccaaaatctctccccacacggtgtggttggc |
40779993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 447 - 569
Target Start/End: Complemental strand, 40779906 - 40779784
Alignment:
| Q |
447 |
gccccaattcctctattaatggacttaactttgacctagtttactccctaacattaatctgctaaaatacacaactataaattaacttttagttgtgtat |
546 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40779906 |
gccccaattcctctattaatggacttaactttgacctagtttactccctaacattaatctgctaaaatacacaactataaattaacttttagttgtgtat |
40779807 |
T |
|
| Q |
547 |
tttcagataaaatacactactaa |
569 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
40779806 |
tttcagataaaatacactactaa |
40779784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University