View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19209_high_5 (Length: 523)
Name: NF19209_high_5
Description: NF19209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19209_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 7 - 505
Target Start/End: Complemental strand, 47918716 - 47918228
Alignment:
| Q |
7 |
aagaatataacaagtctggaacaaaagaatacaccggcaataaaaaagagtttatacataaaaactctttcacttcagatagaattggacagaaataaac |
106 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47918716 |
aagaatataacaagtctggaacaaaagaatacaccggcaataaaaaagagtttatacataaaaactctttcacttcagatagaattggacagaaataaat |
47918617 |
T |
|
| Q |
107 |
gtg-agaaaatggaaagnnnnnnntataatcttgatttatattactaatactctgactgcaattttttataatatcatagattgcagcagcaatttcaaa |
205 |
Q |
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| | |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47918616 |
atacataaaa---aaa--------tataatcttgatttatattactaatactctgactgcaattttttataatatcatagattgcagcagcaatttcaaa |
47918528 |
T |
|
| Q |
206 |
agcttaattagtacctgaattatgccggaatggtcaccctttgagtgcttttcgaacctttataggctcaacaggttcatctcccctattttgtctctga |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47918527 |
agcttaattagtacctgaattatgccggaatggtcaccctttgagtgcttttcgaacctttataggctcaacaggttcatctcccctattttgtctctga |
47918428 |
T |
|
| Q |
306 |
ttcatggtcttgttttcctcacttgcgtgaaaagcatctgacctgcgacggatagagtcgggaaaaccattgattttgaccttaaactcatcatactcgc |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
47918427 |
ttcatggtcttgttttcctcacttgcgtgaaaagcatctgacctgcgatggatagagtcgggaaaaccattgattttgaccttaaactcatcatactcac |
47918328 |
T |
|
| Q |
406 |
gcttcagccttctacaatccttcacaaaatctggtttcactttgtttttgtaaggatcaccctttaagttgaagtatgattcaggattcctaggttctat |
505 |
Q |
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||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47918327 |
gcttcagccttctacgatccttcacaaaatctagtttcactttgtttttgtaaggatcaccctttaagttgaagtatgattcaggattcctaggttctat |
47918228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 6932583 - 6932520
Alignment:
| Q |
7 |
aagaatataacaagtctggaacaaaagaatacaccggcaataa---aaaagagtttatacataa |
67 |
Q |
| |
|
||||||||| ||||||||||||||||||||| | |||||||| |||||||||||||||||| |
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| T |
6932583 |
aagaatataccaagtctggaacaaaagaatatattggcaataaaaaaaaagagtttatacataa |
6932520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 180; Significance: 6e-97; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 251 - 505
Target Start/End: Original strand, 29918750 - 29919007
Alignment:
| Q |
251 |
tgcttttcgaacctttataggctcaacaggttcatctcccctattttgtctctgat---tcatggtcttgttttcctcacttgcgtgaaaagcatctgac |
347 |
Q |
| |
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||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||| ||||||| ||||| ||||||||||||||| |
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| T |
29918750 |
tgctttttgaacctttataggctcaacaggttcatcacccctattttgtctctgatgtttcatggccttgatttcctctcttgcatgaaaagcatctgac |
29918849 |
T |
|
| Q |
348 |
ctgcgacggatagagtcgggaaaaccattgattttgaccttaaactcatcatactcgcgcttcagccttctacaatccttcacaaaatctggtttcactt |
447 |
Q |
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|||||||||||||||||||| |||||||||||| | ||||| |||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
29918850 |
ctgcgacggatagagtcgggcaaaccattgattctaaccttgaactcatcatactcacgcttcagccttctacgatccttcacaaaatcaggtttcactt |
29918949 |
T |
|
| Q |
448 |
tgtttttgtaaggatcaccctttaagttgaagtatgattcaggattcctaggttctat |
505 |
Q |
| |
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|||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
29918950 |
tgtttttgtaaggatctctctttaagttgaagtatgattcaggattcctaggctctat |
29919007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 29918456 - 29918694
Alignment:
| Q |
13 |
ataacaagtctggaacaaaagaatacaccggcaataaaaaagagtttatacataaaaactctttcacttcagatagaattggacagaaataaacgtgaga |
112 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||| ||||||| ||||||||||||| ||||| |||||| |
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|
| T |
29918456 |
ataacaagtctggaacaaaagaatacatcggcaataaaa--gagtttatacataaaaagtctt-cacttcacatagaattggacataaataggtgtgaga |
29918552 |
T |
|
| Q |
113 |
aaatggaaagnnnnnnntataatcttgatttatattactaatactctgactgcaattttttataatatcatagattgcagcagcaatttcaaaagct--- |
209 |
Q |
| |
|
||||||||| | |||||||||||||||||||||| |||| |||| | ||||||||||| |||||||| |||||||||||||||||| | |
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| T |
29918553 |
aaatggaaa---ataatttgaatcttgatttatattactaattctctaactgaatttttttataatttcatagatcacagcagcaatttcaaaagtttag |
29918649 |
T |
|
| Q |
210 |
taattagtacctgaattatgccggaatggtcaccctttgagtgct |
254 |
Q |
| |
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|| ||||||||||||||||||| | |||||||||| ||||||||| |
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|
| T |
29918650 |
tacttagtacctgaattatgccagcatggtcaccccttgagtgct |
29918694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 508645 - 508582
Alignment:
| Q |
7 |
aagaatataacaagtctggaacaaaagaatacaccggcaataa---aaaagagtttatacataa |
67 |
Q |
| |
|
||||||||| ||||||||||||||||||||| | |||||||| |||||||||||||||||| |
|
|
| T |
508645 |
aagaatataccaagtctggaacaaaagaatatattggcaataaaaaaaaagagtttatacataa |
508582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 26291256 - 26291192
Alignment:
| Q |
7 |
aagaatataacaagtctggaacaaaagaatacaccggcaataa----aaaagagtttatacataa |
67 |
Q |
| |
|
||||||||| ||||||||||||||||||||| | |||||||| |||||||||||||||||| |
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|
| T |
26291256 |
aagaatataccaagtctggaacaaaagaatatattggcaataaaaaaaaaagagtttatacataa |
26291192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 437
Target Start/End: Complemental strand, 14610199 - 14610146
Alignment:
| Q |
384 |
accttaaactcatcatactcgcgcttcagccttctacaatccttcacaaaatct |
437 |
Q |
| |
|
||||| |||||||||||||| | ||||| |||||| | |||||||||||||||| |
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|
| T |
14610199 |
accttgaactcatcatactccctcttcacccttcttctatccttcacaaaatct |
14610146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 18290966 - 18290906
Alignment:
| Q |
7 |
aagaatataacaagtctggaacaaaagaatacaccggcaa-taaaaaagagtttatacata |
66 |
Q |
| |
|
||||||||||||||| ||||||||||||||| | || || |||||| ||||||||||||| |
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|
| T |
18290966 |
aagaatataacaagtttggaacaaaagaatatattgggaattaaaaaggagtttatacata |
18290906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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