View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19209_low_10 (Length: 403)
Name: NF19209_low_10
Description: NF19209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19209_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 16 - 387
Target Start/End: Original strand, 12473865 - 12474236
Alignment:
| Q |
16 |
atcaattattctgacaggaaaattctacagtcttccttataattaaggacatttgatcgttaaagggacacattctctaaaccctaaaaacttcaccccc |
115 |
Q |
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| T |
12473865 |
atcaatgattccgacaggaaaattctacagtcttccttataattaaggacagatgatcgttaaagggacacattctctaaaccctaaaaacttcaccccc |
12473964 |
T |
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| Q |
116 |
tttgatcaccgactaacttgattattgtagtgtttgcaagtatacaatcccttatgaagagctatagtcgtcctttcttccaccactctggctttcgatt |
215 |
Q |
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| T |
12473965 |
tttgatcactgactaacttgattattgtagtgtttgcaagtatacaatcctttatgaagagctatcgtcgtcctttcttccaccactctggctttcgatt |
12474064 |
T |
|
| Q |
216 |
taggtccactccggcttttgatttaggtcctttcttccttattcaatcttaataaaatgaagtttttaatgaacattatttttatgtatcgttttgaaca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12474065 |
taggtccactccggcttttgatttaggtcctttcttccttattcaatcttaataaaatgaagtttttaatgaacattatttttatgtatcgttttgaaca |
12474164 |
T |
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| Q |
316 |
cctaaaatcaactatatatcgagcaatgagtctccaaagaagtagcttaggttgtgacaccgaagaagttat |
387 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12474165 |
cctacaatcaactatatatcgagcaatgagtctccaaagaagtagcttaggttgtgacaccgaagaagttat |
12474236 |
T |
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