View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19209_low_12 (Length: 399)
Name: NF19209_low_12
Description: NF19209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19209_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 52787905 - 52788289
Alignment:
| Q |
1 |
acatacccaactagaacgtattaaccattttatgataattgagatgtcatatccaccggtcgatggttttgtgttctaattttgttttcgcttaaaaatt |
100 |
Q |
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| T |
52787905 |
acatacccaactagaacgtattaaacattttatgataattgagatgtcatatccaccggtcgatggttttgtgttctaattttgtttccgcttaaaaaat |
52788004 |
T |
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| Q |
101 |
tcgtagagtataacggttaannnnnnnn-caaaaagaaattactagcaggttgtacattttttagtcacattttgtgtgt--accaaattgtaacaacaa |
197 |
Q |
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| T |
52788005 |
ccgtagagtataacggttaatttttttttcaaaaagaaattactacgagatagtacattttttagtcacattttgtgtgtgtaccaaattgtaacaacaa |
52788104 |
T |
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| Q |
198 |
caaaagtgataa----------ggaatgataaatgaacacacaaaaaatgacaccatggtcatttttgtaattttccattaaaa-aacaatggcacaatt |
286 |
Q |
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| T |
52788105 |
caaaagtgataaatccaaaacaggaatgataaatgaacacacaaata-tgacaccttagtcatttttgtaattttccattaaaaaaacaatggcataatt |
52788203 |
T |
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| Q |
287 |
gagatttcaactcaacataaggggtatttgtgtgaattggcctctctttttcctctccatctggatgctcaaccttcaccatcacc |
372 |
Q |
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| T |
52788204 |
gagatttcaactcaacataaggggtatttgtgtgaattggcctctctttttcctctccatctggatgctcaaccttcaccatcacc |
52788289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 52794124 - 52794508
Alignment:
| Q |
1 |
acatacccaactagaacgtattaaccattttatgataattgagatgtcatatccaccggtcgatggttttgtgttctaattttgttttcgcttaaaaatt |
100 |
Q |
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| T |
52794124 |
acatacccaactagaacgtattaaacattttatgataattgagatgtcatatccaccggtcgatggttttgtgttctaattttgtttccgcttaaaaaat |
52794223 |
T |
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| Q |
101 |
tcgtagagtataacggttaannnnnnnn-caaaaagaaattactagcaggttgtacattttttagtcacattttgtgtgt--accaaattgtaacaacaa |
197 |
Q |
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| T |
52794224 |
ccgtagagtataacggttaatttttttttcaaaaagaaattactacgagatagtacattttttagtcacattttgtgtgtgtaccaaattgtaacaacaa |
52794323 |
T |
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| Q |
198 |
caaaagtgataa----------ggaatgataaatgaacacacaaaaaatgacaccatggtcatttttgtaattttccattaaaa-aacaatggcacaatt |
286 |
Q |
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| T |
52794324 |
caaaagtgataaatccaaaacaggaatgataaatgaacacacaaata-tgacaccttagtcatttttgtaattttccattaaaaaaacaatggcataatt |
52794422 |
T |
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| Q |
287 |
gagatttcaactcaacataaggggtatttgtgtgaattggcctctctttttcctctccatctggatgctcaaccttcaccatcacc |
372 |
Q |
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| T |
52794423 |
gagatttcaactcaacataaggggtatttgtgtgaattggcctctctttttcctctccatctggatgctcaaccttcaccatcacc |
52794508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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