View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19209_low_13 (Length: 392)
Name: NF19209_low_13
Description: NF19209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19209_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 60 - 376
Target Start/End: Complemental strand, 47949971 - 47949655
Alignment:
| Q |
60 |
tcaacagttcagatttaatttttaaataacgactaaaattacgctggggtgacagacttggatcctctaatactcacacaataagacataagcctataca |
159 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47949971 |
tcaacagctcagatttaatttttaaaaaacgactaaaattacgctggggtgacagacttggatcctctaatactcacacaataagacataagcctataca |
47949872 |
T |
|
| Q |
160 |
taatataccttaaaatgataactattagtggttgtcatagtccataatatacctaaaccaatttaattgctgcaaccaaataaccgtcatgaatcatagt |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47949871 |
taatataccttaaaatgataactattagtggttgtcatagtccataatatacctaaaccaatttaattgctgcaaccaaataaccgtcatgaatcatagt |
47949772 |
T |
|
| Q |
260 |
ccataatactcaacaagccctaggatgtaacatacaaaacataatatcaaaccagtaaagatatacatgaccaaccatcttcacacattgtcatttataa |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47949771 |
tcataatactcaacaagccctaggatgtaacatacaaaacataatatcaaaccagtaaagatatacatgaccaaccatcttcacacattgtcatttataa |
47949672 |
T |
|
| Q |
360 |
acaaacttcatagtttt |
376 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
47949671 |
tcaaatttcatagtttt |
47949655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University