View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19209_low_14 (Length: 323)
Name: NF19209_low_14
Description: NF19209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19209_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 22 - 316
Target Start/End: Original strand, 16687840 - 16688134
Alignment:
| Q |
22 |
catgatcatattcgacaatgcatctctaccctggtctactccaaaacattggcactggaaggagggaaaacttcatcgtttccattggagtcctttgatt |
121 |
Q |
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| T |
16687840 |
catgatcatattcgacaatgcatctctaccctggtctactccaaaacattggcactggaaggagggaaaacttcatcgtttccatcggagtcctttgatt |
16687939 |
T |
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| Q |
122 |
caaccactgtaaccgtttcagtgtttccataaccattttttgctacgctctctcattcaccttgtgctaagaaaaccactgatgaaagctacaacatagt |
221 |
Q |
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||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16687940 |
caaccaccataaccgtttcggtgtttccataaccattttttgctacgctctctcgttcaccttgtgctaagaaaaccactgatgaaagctacaacatagt |
16688039 |
T |
|
| Q |
222 |
cgtggctcttcctttgggatccatactctttagagttaagctgacaccatcctctctcccgtcgcattctgcgacgtcaatgttgcttcatctca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||| ||||| |
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| T |
16688040 |
cgtggctcttcctttgggatccatactctttagagttaagctgacaccatcctctctcccgtcgcagaaggggacgtcgatgttgcttcttctca |
16688134 |
T |
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