View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19209_low_15 (Length: 314)
Name: NF19209_low_15
Description: NF19209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19209_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 4763216 - 4762998
Alignment:
| Q |
1 |
gtctctaatctaactagtataaaacattatattatttcctatgttttatgcaccaatactaaaatcacactaattaagattaagatgacttctttttcct |
100 |
Q |
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| T |
4763216 |
gtctctaatctaactagtataaaacatgatattatttcttatgttttatgcaccaatactaaaatcacactaattaagattaagatgacttctttttcct |
4763117 |
T |
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| Q |
101 |
catacttgcttgtgtttttccttgcatctcttattctcatccctcaaggctttgcttctcaacc---taatcatccaaaacatccaccatctactcaagg |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||| |||||||||||| |
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| T |
4763116 |
catacttgcttgtgtttttccttgcatctcttattctcatccctcaaggctttgcttctcaacctcatcatcatccaaaccatccactatctactcaagg |
4763017 |
T |
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| Q |
198 |
atttggtgatcattctcat |
216 |
Q |
| |
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||||||||||||||||||| |
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| T |
4763016 |
atttggtgatcattctcat |
4762998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 4638867 - 4638669
Alignment:
| Q |
1 |
gtctctaatctaactagtataaaacattatattatttcctatgttttatgcaccaatactaaaatcacactaattaagattaagatgacttctttttcct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4638867 |
gtctctaatctaactagtataaaacattatattatttcttatgttttatgcaccaatactaaaatcacactaattaagattaagatgacttctttttcct |
4638768 |
T |
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| Q |
101 |
catacttgcttgtgtttttccttgcatctcttattctcatccctcaaggctttgcttctcaacc---taatcatccaaaacatccaccatctactcaag |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||| |||||||||| |
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| T |
4638767 |
catacttgcttgtgtttttccttgcatctcttattctcatccctcaaggctttgcttctcaacctcatcatcatccaaaccatccaccgtctactcaag |
4638669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 4668458 - 4668306
Alignment:
| Q |
1 |
gtctctaatctaactagtataaaacattatattatttcctatgttttatgcaccaatactaaaatcacactaattaagattaagatgacttctttttcct |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4668458 |
gtctctaatctaactagtataaaacatgatattatcccctatgttttatgctccaatactaaaatcacactaattaagattaagatgacttctttttcct |
4668359 |
T |
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| Q |
101 |
catacttgcttgtgtttttccttgcatctcttattctcatccctcaaggcttt |
153 |
Q |
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||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
4668358 |
catacttgcttgtgtttttccttgcatctctgattctcattcctcaaggcttt |
4668306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 9 - 154
Target Start/End: Original strand, 4176849 - 4176988
Alignment:
| Q |
9 |
tctaactagtataaaacattatattatttcctatgttttatgcaccaatactaaaatcacactaattaagattaagatgacttctttttcctcatacttg |
108 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||| | ||||||| ||||||||| |||||||||| |
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| T |
4176849 |
tctaactagtataaaacattatattattccctatgttttatgcatcaatacaaaaatcacacta------actaagatggcttcttttttctcatacttg |
4176942 |
T |
|
| Q |
109 |
cttgtgtttttccttgcatctcttattctcatccctcaaggctttg |
154 |
Q |
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|||||||||||| |||||| ||| |||||||||||||||||||||| |
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| T |
4176943 |
cttgtgtttttctttgcatttctgattctcatccctcaaggctttg |
4176988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 9 - 154
Target Start/End: Original strand, 4180679 - 4180814
Alignment:
| Q |
9 |
tctaactagtataaaacattatattatttcctatgttttatgcaccaatactaaaatcacactaattaagattaagatgacttctttttcctcatacttg |
108 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||| |||| ||||||||| |||||||||| |
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| T |
4180679 |
tctaactagtataaaacattatattattccctatgttttatgcatcaatacaaaaatcacactaa----------gatggcttcttttttctcatacttg |
4180768 |
T |
|
| Q |
109 |
cttgtgtttttccttgcatctcttattctcatccctcaaggctttg |
154 |
Q |
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|||||||||||| |||||| ||| |||||||||||||||||||||| |
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| T |
4180769 |
cttgtgtttttctttgcatttctgattctcatccctcaaggctttg |
4180814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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