View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19209_low_16 (Length: 308)
Name: NF19209_low_16
Description: NF19209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19209_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 265
Target Start/End: Original strand, 9877532 - 9877778
Alignment:
| Q |
19 |
ttatcagcagcattgacgagaatctcgtcgaagatcttgtagagaccgggaacgtaggagattgaacggttaaccatttcttcgttttcgtaaacccata |
118 |
Q |
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| T |
9877532 |
ttatcagcagcattgacgagaatctcgtcgaagatcttgtagagaccgggaacgtaggagattgaacggttaaccatttcttcgttttcgtaaacccata |
9877631 |
T |
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| Q |
119 |
gattttgagtgtgtttttcaattgaaccgacataggtgtcgggacggaggagaatgtgttcgagctgtgttttcttttggtacatttcttcgattgtttt |
218 |
Q |
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| T |
9877632 |
gattttgagtgtgtttttcaattgaaccgacgtaggtatcgggacggaggagaatgtgttcgagctgtgttttcttttggtacatttcttcaattgtttt |
9877731 |
T |
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| Q |
219 |
cgaaggaatgttcgcggtggtggacggttggagaggacgtttttcca |
265 |
Q |
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| T |
9877732 |
cgaaggaatgtttgcggtggtggacggttggagaggacgtttttcca |
9877778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 36 - 182
Target Start/End: Original strand, 38841459 - 38841605
Alignment:
| Q |
36 |
gagaatctcgtcgaagatcttgtagagaccgggaacgtaggagattgaacggttaaccatttcttcgttttcgtaaacccatagattttgagtgtgtttt |
135 |
Q |
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| T |
38841459 |
gagaatctcgtcaaagattttgtaaagtccaggaacgtaggaaacagaacggtgaaccatttcttcgttttcgtaaacccatagattttgagtgtgtttt |
38841558 |
T |
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| Q |
136 |
tcaattgaaccgacataggtgtcgggacggaggagaatgtgttcgag |
182 |
Q |
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| T |
38841559 |
tcagttgaacctatgtacgtatcgggatggaggagaatgtgttcgag |
38841605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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