View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19209_low_17 (Length: 302)
Name: NF19209_low_17
Description: NF19209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19209_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 47918744 - 47919021
Alignment:
| Q |
1 |
ttatacattccattgtggtcgcagttgcaaagccatgaatattaaaacattgatgtcacagcctagattgcggttgcaaactctttaaaaagaaatgcta |
100 |
Q |
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| T |
47918744 |
ttatacattccattgtggtcgcagttgcaaagacatgaatattaaaacattgatgtcacagcctagattgcggttgcaaactctttaaaaagaaatgcta |
47918843 |
T |
|
| Q |
101 |
agtaggtcctagaagttaagtttattcttggggagatgagaatgaataactgatgtctgatgaatgatattttgcaggtgctgttgaaacctccaagtga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47918844 |
agtaggtcctagaagttaagtttattcttggggagatgagaatgaataactgatgtctgatgaatgatattttgcaggtgctgttgaaacctccaagtga |
47918943 |
T |
|
| Q |
201 |
cgaacctcttattggacatgttgatgatgcaaagcttattgacatgaccggtgttgatatccgtcttcccctttttgt |
278 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47918944 |
cgaacctcttattggacatgttgataatgcaaagcttattgacatgaccggtgttgatatccgtcttcccctttttgt |
47919021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 157 - 278
Target Start/End: Complemental strand, 29918330 - 29918209
Alignment:
| Q |
157 |
ctgatgaatgatattttgcaggtgctgttgaaacctccaagtgacgaacctcttattggacatgttgatgatgcaaagcttattgacatgaccggtgttg |
256 |
Q |
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|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||| ||||| |
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| T |
29918330 |
ctgatgaatgatattttgcaggtgatgctgaaacctccaagtgacgaacctcttattggaaatgctgatgatgcaaagcttattgacctgaccgatgttg |
29918231 |
T |
|
| Q |
257 |
atatccgtcttcccctttttgt |
278 |
Q |
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||||||||||||||||| |||| |
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| T |
29918230 |
atatccgtcttccccttcttgt |
29918209 |
T |
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