View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19209_low_18 (Length: 260)
Name: NF19209_low_18
Description: NF19209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19209_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 9 - 245
Target Start/End: Original strand, 35048653 - 35048889
Alignment:
| Q |
9 |
agcagagagagcaaaagcaaatattgttaatttgtggacaacaaattatcacgcaacgggtttgaatcctctcccacatgcatccccctccaacaaaaat |
108 |
Q |
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| T |
35048653 |
agcagagagagcaaaagcaaatattgttaatttgtggacaacaaattatcacgcaacgggtttgaatcctctcccacatgcatccccctccaacaaaaat |
35048752 |
T |
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| Q |
109 |
attatgagtgaaaggagtgagaggatgagggaaaacgagtgtcagttaagcgttgttgcgttccggtgcttttttaaaacacaaatcaacctcattccat |
208 |
Q |
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| T |
35048753 |
attatgagtgaaaggagtgagaggatgagggaaaacgagtgtcagttaagtgttgttgcgttccggtgcttttttaaaacacaaatcaacctcattccat |
35048852 |
T |
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| Q |
209 |
ttgcttaacatgtaatttgcttagatatggtagtttt |
245 |
Q |
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| T |
35048853 |
ttgcttaacatgtaatttgcttagatatgctagtttt |
35048889 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 7290393 - 7290430
Alignment:
| Q |
183 |
taaaacacaaatcaacctcattccatttgcttaacatg |
220 |
Q |
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| T |
7290393 |
taaaacacaaaccaacctctttccatttgcttaacatg |
7290430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 231
Target Start/End: Complemental strand, 45298538 - 45298493
Alignment:
| Q |
186 |
aacacaaatcaacctcattccatttgcttaacatgtaatttgctta |
231 |
Q |
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| T |
45298538 |
aacacaaatcaacctctttccatttgcttaacaagtcatttactta |
45298493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 10127501 - 10127465
Alignment:
| Q |
184 |
aaaacacaaatcaacctcattccatttgcttaacatg |
220 |
Q |
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|||||||||||||||||| || ||||||||||||||| |
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| T |
10127501 |
aaaacacaaatcaacctcttttcatttgcttaacatg |
10127465 |
T |
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