View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19209_low_2 (Length: 590)
Name: NF19209_low_2
Description: NF19209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19209_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 404
Target Start/End: Complemental strand, 14568302 - 14567904
Alignment:
| Q |
1 |
caatttcaaatatgttattttcacgttactctttgtactttgtcgcacggaaaaattctgcttggcaggctatacaaatggacccagaattttcgaagaa |
100 |
Q |
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| T |
14568302 |
caatttcaactatgttattt----gttactcttcgtactttgtcacacgacaaaattctgcatggcaggctatacagatggacccggaattttctaagaa |
14568207 |
T |
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| Q |
101 |
cattggtcagattgttctgcttggtggagcttttgcagtaaatggaagtgtgaatcctgctgctgaaacaaatgtaagtatttccattttgtattcaaat |
200 |
Q |
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| T |
14568206 |
cattggtcagattgttctgcttggtggagcttttgcagtaaatggaagtgtgaatccttctgctgaaacaaatgtaagtatttccatttttcattcaaat |
14568107 |
T |
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| Q |
201 |
tccttgaaataaactccgtaaaacaattacaccgcttaccgcttgatctatctaaattttcagttggatttgattccagttattaggtgatccagatgct |
300 |
Q |
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| T |
14568106 |
tc-ttgaaataaactccataaaactgtcataccgctcaccgcttgatctatctaaattttcagttggatttgattccagatattaggtgatccagatgct |
14568008 |
T |
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| Q |
301 |
gcagatgttgtattcacacgtggcgcagatgttctcgccgtgggaataaacgttacacaacaagtcgtatttacaggtaccccccattggaactctttgt |
400 |
Q |
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| T |
14568007 |
gcagatgttgtattcacaagtggcgcagatgttcttgctgtggggataaacgttacacaacaagtcgtatttacaggtaccccccattggaactctttgt |
14567908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 62 - 381
Target Start/End: Complemental strand, 14575943 - 14575619
Alignment:
| Q |
62 |
ttggcaggctatacaaatggacccagaattttcgaagaacattggtcagattgttctgcttggtggagcttttgcagtaaatggaagtgtgaatcctgct |
161 |
Q |
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| T |
14575943 |
ttggcaggctatacagatggacccagaattcgctaagaacattggacagatcgttctacttggtggatctttcgcagtaaatggcaatgtgaatccagct |
14575844 |
T |
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| Q |
162 |
gctgaaacaaatgtaagtatttccattttgtattcaaattccttgaaataaactccgt--aaaacaattacaccgcttaccgcttg----atctatctaa |
255 |
Q |
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| T |
14575843 |
gctgaagcaaatgtaagtatgtctattttgtattc-aatttcttaatataaattccattaaaaaaaatgatatcagtcgctgcttgatatatctatctaa |
14575745 |
T |
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| Q |
256 |
attttcagttggatttgattccagttattaggtgatccagatgctgcagatgttgtattcacacgtggcgcagatgttctcgccgtgggaataaacgtta |
355 |
Q |
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| T |
14575744 |
ctcttcaattggatttgattccagatattcggtgatccagatgctgcagatgttgtgttcacaagtggcgcagatatactcgcagtgggaataaatgtca |
14575645 |
T |
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| Q |
356 |
cacaacaagtcgtatttacaggtacc |
381 |
Q |
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| T |
14575644 |
ctcaccaagtcgtattgtcaggtacc |
14575619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 549 - 586
Target Start/End: Complemental strand, 14567895 - 14567858
Alignment:
| Q |
549 |
aacaacatgatcatgctgctttttaaattttgattcat |
586 |
Q |
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| T |
14567895 |
aacaacatgatcatgctgctattttaattttgattcat |
14567858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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