View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19209_low_20 (Length: 229)
Name: NF19209_low_20
Description: NF19209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19209_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 7e-73; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 25 - 171
Target Start/End: Original strand, 46185337 - 46185483
Alignment:
| Q |
25 |
tttacattctaaatgtttgatagtgaacaaattcagaagaaaagagaatgatcgagaagacgaagtggaagctcctcgagagaagacgaagcatcatgaa |
124 |
Q |
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| T |
46185337 |
tttacattctaaatgtttgatagtgaacaaattcagaagaaaagagaatgatcgagaagacgaagtggaagctcctccagagaagacgaagcatcatgaa |
46185436 |
T |
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| Q |
125 |
gtaacaattcgtttcaatgtgactgttggacctgacctgagtataca |
171 |
Q |
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| T |
46185437 |
gtaacaattcgtttcaatgtgactgttgcacctgacctgagtataca |
46185483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 46185262 - 46185306
Alignment:
| Q |
1 |
ttttgtttaattttcatttggtactttacattctaaatgtttgat |
45 |
Q |
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| T |
46185262 |
ttttgtttaattttcatttggtactttacattctaaatgtttgat |
46185306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 167 - 210
Target Start/End: Original strand, 46185519 - 46185563
Alignment:
| Q |
167 |
atacattgtatgaaatgctcttt-gtgttttttaatagacctgaa |
210 |
Q |
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| T |
46185519 |
atacattgtatgaaatgctcttttgtgttttttaatagacctgaa |
46185563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 40 - 138
Target Start/End: Complemental strand, 5895340 - 5895242
Alignment:
| Q |
40 |
tttgatagtgaacaaattcagaagaaaagagaatgatcgagaagacgaagtggaagctcctcgagagaagacgaagcatcatgaagtaacaattcgttt |
138 |
Q |
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| T |
5895340 |
tttgatagtgaacaaattcagatgagaagagaatgattgagatgacaaagtggaagctccaccaaagaagacgaagcaccgggaagtaacaatttgttt |
5895242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 5895400 - 5895343
Alignment:
| Q |
14 |
tcatttggtactttacattctaaatgtttgatagtgaacaaattcagaagaaaagaga |
71 |
Q |
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| T |
5895400 |
tcatttggtactttacattctaactatttgatagtgatcaaattcagatgagaagaga |
5895343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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