View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19209_low_4 (Length: 569)
Name: NF19209_low_4
Description: NF19209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19209_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 305; Significance: 1e-171; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 187 - 551
Target Start/End: Complemental strand, 16202281 - 16201917
Alignment:
| Q |
187 |
aagcttggatacggtcaagaaggcgaaacaacaactggtgaaactccatcgaaccaaagcagttacacatctacaatagctgacaaagccgccacagcta |
286 |
Q |
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| T |
16202281 |
aagcttgggtacggtgaagaaggcaaaacaacagctggcgatactccattgaaccaaagaagttacacatctacaatagctgacaaagccgccacagcta |
16202182 |
T |
|
| Q |
287 |
aaaatgcggttgcttcaaagcttggatatggcgaaacaggagtaccaacaaatgaaactcggtcaaatcagagtagctatacagagaaaatctcatctgc |
386 |
Q |
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| T |
16202181 |
aaaatgcggttgcttcaaagcttggatatggcgaaacaggagtaacaacaaatgaaactccgtcgaatcagagtagctatacagagaaaatttcatctgc |
16202082 |
T |
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| Q |
387 |
aacatctgcaatagctgataaagctgcatcagctaaaaacgcagtagcctcaaagcttggcttcggcgaaaagggtgcaactgagacagagaaaatgaca |
486 |
Q |
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| T |
16202081 |
aacatctgcaatagctgataaagctgcatcagctaaaaacgcagtagcctcaaagcttggcttcggcgaaaagggtgcaactgagacagagagaatgaca |
16201982 |
T |
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| Q |
487 |
acctatgaagagaacaattctggagtttcacctgcagaatatggaaagaatattgcagcttcctt |
551 |
Q |
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| T |
16201981 |
acctacgaagagaacaattctggagtctcacctgcagaatatggaaagaatattgcagcttcctt |
16201917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 16202584 - 16202274
Alignment:
| Q |
1 |
tataatgcagcttctgcagtcaccgataaagctgctggtgctaaaaatgccgttgcttcaaagcttggatacggtgaaacaaatgaaacaacacctagtg |
100 |
Q |
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| T |
16202584 |
tataatgcagcttctgcagtcaccgacaaagctgctggtgctaaaaatgccgttgcttcaaagcttggatacggtgaaacaaatgaaacaacacctggtg |
16202485 |
T |
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| Q |
101 |
aaaggcaatcaaaccagaccagttacccctctgtgacagctgctgtcattgacaaagctgccttggctaaaaacgccgtggcatcgaagcttggatacgg |
200 |
Q |
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| T |
16202484 |
aaaggcaatcaaaccagaccagttacccctctgtgacagctgctgtcattgacaaagctgccttggctaaaaacgctgtggcatcgaagcttggatacgg |
16202385 |
T |
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| Q |
201 |
tcaagaaggcgaaacaacaactggtgaaactccatcgaaccaaagcagttacacatctacaatagctgacaaagccgccacagctaaaaatgcggttgct |
300 |
Q |
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| T |
16202384 |
tgaagaaggcgaaacaacaactggtgaaactccatcgaaccaaagcagttacacatctacaatagctgacaaagccgccacagctaaaaatacggttgct |
16202285 |
T |
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| Q |
301 |
tcaaagcttgg |
311 |
Q |
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||||||||||| |
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| T |
16202284 |
tcaaagcttgg |
16202274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 6 - 255
Target Start/End: Complemental strand, 16202846 - 16202594
Alignment:
| Q |
6 |
tgcagcttctgcagtcaccgataaagctgctggtgctaaaaatgccgttgcttcaaagcttggatacgg---tgaaacaaatgaaacaacacctagtgaa |
102 |
Q |
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|||||| ||||||||||| | ||||| |||| ||||| ||| || |||||||||||| ||||||| || ||||||| || |||||| || ||||| |
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| T |
16202846 |
tgcagcgtctgcagtcactaacaaagccgctgatgctacaaacgcggttgcttcaaagattggatatggcagtgaaacaggcgagacaacaactggtgaa |
16202747 |
T |
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| Q |
103 |
aggcaatcaaaccagaccagttacccctctgtgacagctgctgtcattgacaaagctgccttggctaaaaacgccgtggcatcgaagcttggatacggtc |
202 |
Q |
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| T |
16202746 |
aggccaacaagccaggtcagttacccatctgtaacagctgcagtcatagacaaagccgccttggctaaaaacgctgtcacgtcgaagcttggatacggtg |
16202647 |
T |
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| Q |
203 |
aagaaggcgaaacaacaactggtgaaactccatcgaaccaaagcagttacaca |
255 |
Q |
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||| ||| ||||||||||||||||||||||| | ||||| ||||| |||||| |
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| T |
16202646 |
aaggaggtgaaacaacaactggtgaaactcctactaaccagagcagctacaca |
16202594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 16202185 - 16202144
Alignment:
| Q |
40 |
gctaaaaatgccgttgcttcaaagcttggatacggtgaaaca |
81 |
Q |
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| T |
16202185 |
gctaaaaatgcggttgcttcaaagcttggatatggcgaaaca |
16202144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 16202545 - 16202504
Alignment:
| Q |
283 |
gctaaaaatgcggttgcttcaaagcttggatatggcgaaaca |
324 |
Q |
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| T |
16202545 |
gctaaaaatgccgttgcttcaaagcttggatacggtgaaaca |
16202504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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