View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19209_low_8 (Length: 419)
Name: NF19209_low_8
Description: NF19209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19209_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 14 - 326
Target Start/End: Original strand, 39935904 - 39936216
Alignment:
| Q |
14 |
aaatgccactgcaaattccaactatgttgatgtcatacctacaatttcgaacaacggaaagttgtatttattaattttgtacaatgttatccataaccaa |
113 |
Q |
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| T |
39935904 |
aaatgccaatgcaaattccaactatgttgatgtcatacctacaatttcgaacaacggaaagttgtatttattagttttgtacaatattatccataaccaa |
39936003 |
T |
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| Q |
114 |
cacaattgaaaacatgttcaatggctgaaatgaatctggatgcgcccaacaaatatctctcaatacatctaagtcgtctcttctattccaactcacagaa |
213 |
Q |
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| T |
39936004 |
cacaattgaaaacatgttcaatagctggaatgaatctgaatgcgcccaataaatatctctccatacatttaagtcgtctcttctattccaactcacagaa |
39936103 |
T |
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| Q |
214 |
tctacatcctctattaaattcaacaaattttgcatctctattctaagacctctcacctctttttccaccatactcctcttcttatatacttggctgatct |
313 |
Q |
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| T |
39936104 |
tctacatcctctattaaattgaacaaattttgcatctctattctaggacctctcacctctttttccaccatactcctcttcttatatacttggctgatct |
39936203 |
T |
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| Q |
314 |
gaatcacattcta |
326 |
Q |
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| T |
39936204 |
gaatcacattcta |
39936216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 334 - 404
Target Start/End: Original strand, 39936255 - 39936325
Alignment:
| Q |
334 |
gaaacatgaagatttgtcaaatctttaacatatttatgctcttttacaattatattagatgccctataaat |
404 |
Q |
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| T |
39936255 |
gaaacatgaagatttgtcaaatctttaacatatttatgctcttatacaattatattagacgccctataaat |
39936325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 41743899 - 41743851
Alignment:
| Q |
43 |
atgtcatacctacaatttcgaacaacggaaagttgtatttattaatttt |
91 |
Q |
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| T |
41743899 |
atgtcatacctacaattttgagcaatgaaaatttgtatttattaatttt |
41743851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 42 - 197
Target Start/End: Original strand, 19367750 - 19367904
Alignment:
| Q |
42 |
gatgtcatacctacaatttcgaacaacggaaagttgtatttattaattttgtacaatgttatccataaccaacacaattgaaaacatgttcaatggctga |
141 |
Q |
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| T |
19367750 |
gatgtcatacctacaatttcgagcaacgacaatctatatttattagttttgtatg-tgttatccataatcaacacaattggaaacaagttcaacaacttg |
19367848 |
T |
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| Q |
142 |
aatgaatctggatgcgcccaacaaatatctctcaatacatctaagtcgtctcttct |
197 |
Q |
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| T |
19367849 |
acggaatctggatgctcccacattatatctctcattacatctaagtcatctcttct |
19367904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 226 - 311
Target Start/End: Complemental strand, 29551333 - 29551248
Alignment:
| Q |
226 |
attaaattcaacaaattttgcatctctattctaagacctctcacctctttttccaccatactcctcttcttatatacttggctgat |
311 |
Q |
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|||||||||| |||| ||| |||||| |||||||||||||| | ||||||| || ||||||| |||| | |||||||||| |||| |
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| T |
29551333 |
attaaattcatgaaatgttgtatctctgttctaagacctctcgcatcttttttcagcatactcatcttttaatatacttggatgat |
29551248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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