View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19209_low_9 (Length: 408)
Name: NF19209_low_9
Description: NF19209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19209_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 18 - 404
Target Start/End: Complemental strand, 46424256 - 46423874
Alignment:
| Q |
18 |
atgggtcctcttggcttcagcgtcgaccaactcatggttagttagttaattcatcttcatcaccttccaacctttcttcatttttatcttaactctttcc |
117 |
Q |
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| T |
46424256 |
atgggtcctcttggcttcagcgtcgaccaactcatggttagtta----attcatcttcatcaccttccaacctttcttcatttttatcttaactctttcc |
46424161 |
T |
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| Q |
118 |
attttcaatttcaggaattggctggtttgagcgtcgctacttccatatatgaggtatgatactttggcagttttggagtatcgtggcttcagagatggat |
217 |
Q |
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| T |
46424160 |
attttcaatttcaggaattggctggtttgagcgtcgctacttccatatatgaggtatgatactttggcagttttggagtatcgtggcttctgagatggat |
46424061 |
T |
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| Q |
218 |
atgttataagttgtttccacactttcacagttgcttatatgtagataaattcaaatgagacaatccaaataggccgttaatataattcaatcatgaaagt |
317 |
Q |
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| T |
46424060 |
atgttataagttgtttccacactttcacagttgcttatatgtagataaattcaaatgagacaatccaaataggccgttaatataattcaatcatgaaagt |
46423961 |
T |
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| Q |
318 |
ttctttgaatgttttttcttttacaggtttacaaaccgggcgagtatagtcgtgttcttactatatgtggtcctggtaacaatggtg |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46423960 |
ttctttgaatgttttttcttttacaggtttacaaaccgggcgagtatagtcgtgttcttactatatgtggtcctggtaacaatggtg |
46423874 |
T |
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