View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1920_low_1 (Length: 465)
Name: NF1920_low_1
Description: NF1920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1920_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 411; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 18 - 453
Target Start/End: Complemental strand, 40081556 - 40081121
Alignment:
| Q |
18 |
tatgtaggccagtatcgcccaatgctttgtccatttacccaagcctcaccttttcccatacccgtgaagtcaatcgcaactggattactgccggatggag |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40081556 |
tatgtaggccagtatcgcccaatgctttgtccatttacccaagcctcaccttttcccatccccgtgaagtcaatcgcaactggattactgccggatggag |
40081457 |
T |
|
| Q |
118 |
catcaaagtttgtctagtgcaacatgtattacattggttagtagcnnnnnnncatttttcatatagtggcatttccttaatttgaaattcccttacttat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40081456 |
catcaaagtttgtctagtgcaacatgtattacattggttagtagcaaaaaaacatttttcatatagtggcatttccttaatttgaaattcccttacttat |
40081357 |
T |
|
| Q |
218 |
atcaagggaaacaataaattgaaaataaaactaccttgtaccaaaccaatggttggttcttagggtaagtagactgtgaattccaccctccagaacttcc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40081356 |
atcaagggaaacaataaattgaaaataaaactaccttgtaccaaaccaatggttggttcttagggtaagtagactgtgaattccaccctccagaacttcc |
40081257 |
T |
|
| Q |
318 |
actagacagacctaaatcttcgccttttaggccaatctgtatcgaaaaaattaactccattaacaatgtattccattaaagtgataaagaaagaataata |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40081256 |
actagacagacctaaatcttcgccttttaggccaatctgtatcgaaaaaattaactccattaacaatgtattccattaaagtgataaagaaagaataata |
40081157 |
T |
|
| Q |
418 |
aatagttttcgatcaaaaatttaagattgacctgat |
453 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
40081156 |
aatagttttcgatcaaaaatttaagattgacctgat |
40081121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 384
Target Start/End: Complemental strand, 40063205 - 40062840
Alignment:
| Q |
18 |
tatgtaggccagtatcgcccaatgctttgtccatttacccaagcctcaccttttcccatacccgtgaagtcaatcgcaactggattactgccggatggag |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40063205 |
tatgtaggccagtatcgcccaatgctttgtccatttacccaagcctcaccttttcccatccccgtgaagtcaatcgcaactggattactgccggatggag |
40063106 |
T |
|
| Q |
118 |
catcaaagtttgtctagtgcaacatgtattacattggttagtagcnnnnnnncatttttcatatagtggcatttccttaatttgaaattcccttacttat |
217 |
Q |
| |
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|||||||||||||||| |||||||||||| ||||||||||||| | ||||||||||||||||||||| ||||||||||||||| | |||||| |
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| T |
40063105 |
catcaaagtttgtctaatgcaacatgtatgacattggttagta-ccaaaaaacatttttcatatagtggcattcttttaatttgaaattccataacttat |
40063007 |
T |
|
| Q |
218 |
atcaagggaaacaataaattgaaaataaaactaccttgtaccaaaccaatggttggttcttagggtaagtagactgtgaattccaccctccagaacttcc |
317 |
Q |
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|| ||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||| ||||||||||||| ||||| ||| | |||||||| |
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| T |
40063006 |
ataaagggaaacaataaattgaaaataaaattaccttgtaccaaatcaatggttgattcttagggaaagtagactgtgagttccaaccttcggaacttcc |
40062907 |
T |
|
| Q |
318 |
actagacagacctaaatcttcgccttttaggccaatctgtatcgaaaaaattaactccattaacaat |
384 |
Q |
| |
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||| ||||||||||||||||| ||||||||||||| ||||||| | | ||||||||||||||||||| |
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|
| T |
40062906 |
actggacagacctaaatcttcaccttttaggccaacctgtatcaatagaattaactccattaacaat |
40062840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 387
Target Start/End: Complemental strand, 40093836 - 40093468
Alignment:
| Q |
18 |
tatgtaggccagtatcgcccaatgctttgtccatttacccaagcctcaccttttcccatacccgtgaagtcaatcgcaactggattactgccggatggag |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||| |||||||||||||||||||||||| |
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| T |
40093836 |
tatgtaggccagtatcgcccaatgctttgtccatttacccaagcctcgccttttcccatccctgtgaagtcaatcacaactggattactgccggatggag |
40093737 |
T |
|
| Q |
118 |
catcaaagtttgtctagtgcaacatgtattacattggttagtagcnnnnnnncatttttcatatagtggcatttccttaatttgaaattcccttacttat |
217 |
Q |
| |
|
|||||||||||||||| ||||||||| || ||||||||||||||| |||||||||||||||||| || ||||||||||||||| | |||||| |
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| T |
40093736 |
catcaaagtttgtctaatgcaacatgcatgacattggttagtagcaaaaaa-catttttcatatagtggcgttcttttaatttgaaattccataacttat |
40093638 |
T |
|
| Q |
218 |
atcaagggaaacaataaattgaaaataaaactaccttgtaccaaaccaatggttggttcttagggtaagtagactgtgaattccaccctccagaacttcc |
317 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||||||||| ||||||||| ||||||||| |||||| || |||||||||| |||| |||||||| |
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| T |
40093637 |
atcaagggaaacaataaattgaaaattaaattaccttgtaccaaatcaatggttgtttcttagggaaagtagtctttgaattccacgctccggaacttcc |
40093538 |
T |
|
| Q |
318 |
actagacagacctaaatcttcgccttttaggccaatctgtatcgaaaaaattaactccattaacaatgta |
387 |
Q |
| |
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|||||| |||||||||||||| ||||||||||||| ||||||| ||| |||||||||||||||| ||||| |
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|
| T |
40093537 |
actagagagacctaaatcttcaccttttaggccaacctgtatcaaaagaattaactccattaactatgta |
40093468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 22012640 - 22012756
Alignment:
| Q |
17 |
gtatgtaggccagtatcgcccaatgctttgtccatttacccaagcctcaccttttcccatacccgtgaagtcaatcgcaactggattactgccggatgga |
116 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||| || |||||||| || ||||||||||| ||||||||||| || ||||| || ||||| ||||| ||| |
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| T |
22012640 |
gtatgttggccagtatcgcccaatgctctgtccgttcacccaagcttcgccttttcccatccccgtgaagtcgattgcaaccgggttacttccggaggga |
22012739 |
T |
|
| Q |
117 |
gcatcaaagtttgtcta |
133 |
Q |
| |
|
||| ||||||| ||||| |
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| T |
22012740 |
gcaacaaagttcgtcta |
22012756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 44356174 - 44356214
Alignment:
| Q |
36 |
ccaatgctttgtccatttacccaagcctcaccttttcccat |
76 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||| |||| |
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| T |
44356174 |
ccaatgctttgtccatttacccaagcttcaccttttgccat |
44356214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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