View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1920_low_2 (Length: 386)

Name: NF1920_low_2
Description: NF1920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1920_low_2
NF1920_low_2
[»] chr3 (7 HSPs)
chr3 (1-378)||(3669480-3669858)
chr3 (1-68)||(44558096-44558163)
chr3 (1-71)||(3670734-3670804)
chr3 (1-67)||(41926949-41927015)
chr3 (1-71)||(37180094-37180164)
chr3 (1-69)||(117962-118030)
chr3 (4-68)||(33475148-33475212)
[»] chr4 (15 HSPs)
chr4 (1-74)||(45046743-45046816)
chr4 (22-76)||(10321394-10321448)
chr4 (1-70)||(31318084-31318153)
chr4 (1-69)||(11669818-11669886)
chr4 (4-68)||(15562628-15562692)
chr4 (1-49)||(25244132-25244180)
chr4 (1-73)||(44208569-44208641)
chr4 (1-68)||(10322847-10322914)
chr4 (1-68)||(35061344-35061411)
chr4 (1-68)||(40171428-40171495)
chr4 (1-71)||(28162908-28162978)
chr4 (1-69)||(33688373-33688441)
chr4 (1-69)||(34513583-34513651)
chr4 (1-69)||(35054882-35054950)
chr4 (1-69)||(45045199-45045267)
[»] chr8 (17 HSPs)
chr8 (1-80)||(13324080-13324159)
chr8 (1-68)||(16472689-16472756)
chr8 (1-68)||(16477260-16477327)
chr8 (1-69)||(24451176-24451244)
chr8 (1-69)||(39338048-39338116)
chr8 (1-69)||(42816014-42816082)
chr8 (1-71)||(39308272-39308342)
chr8 (1-69)||(21575506-21575574)
chr8 (2-70)||(22959799-22959867)
chr8 (1-69)||(37705832-37705900)
chr8 (1-69)||(37707252-37707320)
chr8 (1-69)||(42817236-42817304)
chr8 (1-71)||(13322880-13322950)
chr8 (1-71)||(21136470-21136540)
chr8 (1-78)||(39310648-39310725)
chr8 (1-70)||(39336711-39336780)
chr8 (1-69)||(36062499-36062567)
[»] chr6 (4 HSPs)
chr6 (1-69)||(22971591-22971659)
chr6 (1-69)||(23816739-23816807)
chr6 (1-71)||(15119370-15119440)
chr6 (1-68)||(7852247-7852314)
[»] chr1 (15 HSPs)
chr1 (1-68)||(36248032-36248099)
chr1 (1-73)||(21795922-21795994)
chr1 (1-68)||(37987223-37987290)
chr1 (1-67)||(12368740-12368806)
chr1 (1-69)||(12251914-12251982)
chr1 (1-69)||(12898919-12898987)
chr1 (1-68)||(15053345-15053412)
chr1 (1-68)||(29232174-29232241)
chr1 (1-71)||(27552046-27552116)
chr1 (1-67)||(51338140-51338206)
chr1 (1-71)||(51839891-51839961)
chr1 (1-78)||(27550461-27550538)
chr1 (1-69)||(25351646-25351713)
chr1 (1-69)||(30981448-30981516)
chr1 (1-69)||(37985907-37985974)
[»] chr5 (10 HSPs)
chr5 (1-70)||(41140150-41140219)
chr5 (1-68)||(13921182-13921249)
chr5 (1-69)||(23318065-23318133)
chr5 (1-69)||(26866207-26866275)
chr5 (1-69)||(34527630-34527698)
chr5 (1-68)||(41138725-41138792)
chr5 (2-68)||(9168465-9168531)
chr5 (5-75)||(19193069-19193139)
chr5 (1-66)||(23312658-23312723)
chr5 (1-73)||(37811956-37812028)
[»] chr2 (7 HSPs)
chr2 (1-69)||(44492579-44492647)
chr2 (1-69)||(21438994-21439062)
chr2 (1-68)||(9111246-9111313)
chr2 (3-69)||(3105939-3106005)
chr2 (1-67)||(33001391-33001457)
chr2 (1-46)||(18673341-18673386)
chr2 (1-49)||(20719566-20719614)
[»] chr7 (8 HSPs)
chr7 (1-68)||(38198761-38198828)
chr7 (1-70)||(43831978-43832047)
chr7 (1-68)||(38875088-38875155)
chr7 (1-71)||(33625935-33626005)
chr7 (3-68)||(38873881-38873946)
chr7 (1-70)||(43309645-43309714)
chr7 (1-69)||(12622124-12622191)
chr7 (1-69)||(46043365-46043433)
[»] scaffold0651 (1 HSPs)
scaffold0651 (1-70)||(5517-5586)
[»] scaffold0093 (1 HSPs)
scaffold0093 (1-69)||(49285-49353)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-70)||(282609-282678)
[»] scaffold0097 (1 HSPs)
scaffold0097 (1-49)||(23404-23452)


Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 3669858 - 3669480
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccctaatatttatgacaaaaacccttttgaaatca 100  Q
    ||||||||||| |||||||||||  ||||||| |  ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3669858 ataaaatttaagtagggattcataatggaagcacccctatttacagggatcttaaatataattaaccctaatatttatgacagaaacccttttgaaatca 3669759  T
Q  101 catcggagcgtgtatgagtagccgtttcacatccaacggccagtaagagcgtaactttatttcttccctcttcaatctccaacggtcatataatctcttc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3669758 catcggagcgtgtatgagtagccgtttcacatccaacggccagtaagagcgtaactttatttcttccctcttcaatctccaacggtcacataatctcttc 3669659  T
Q  201 caaatacaaataattccctctttcaacctcactcttcatttcatcaaccc-aacccnnnnnnntaatcagattcttcttaaatcttgaaacctttctccc 299  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||       |||||||||||||||||||||||||||||||||||||    
T  3669658 caaatacaaataattccctctttcaacctcactcttcatttcttcaacccaaacccaaaaaactaatcagattcttcttaaatcttgaaacctttctccc 3669559  T
Q  300 aaaagcacttaaataaaaaagcacttaaccatgaataacacaaacaacaacaacattcttcttcattccacacaggttc 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3669558 aaaagcacttaaataaaaaagcacttaaccatgaataacacaaacaacaacaacattcttcttcattccacacaggttc 3669480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 44558096 - 44558163
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccc 68  Q
    ||||||||||| |||||| | ||||||||| |||||||||||||||||| || ||| |||||||||||    
T  44558096 ataaaatttaagtagggactaatgttggaaacgcgtctatttatagggacctaaaacataattaaccc 44558163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 3670734 - 3670804
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccctaa 71  Q
    ||||||||||| ||| |||  ||||||||| | |||||||||||| ||| |||||| ||||||||||||||    
T  3670734 ataaaatttaagtagagatcaatgttggaaacacgtctatttataaggaccttaaacataattaaccctaa 3670804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 41927015 - 41926949
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaacc 67  Q
    ||||||||||||||||||   ||||||||||| ||  |||||||||||| |||||| ||||||||||    
T  41927015 ataaaatttaaatagggaccaatgttggaagctcgcttatttatagggaccttaaacataattaacc 41926949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 37180094 - 37180164
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccctaa 71  Q
    ||||||||||| |||||| | ||||||||| | || ||||||||||||| || |||  |||||||||||||    
T  37180094 ataaaatttaagtagggactaatgttggaaacacgcctatttatagggacctaaaacgtaattaaccctaa 37180164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 117962 - 118030
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccct 69  Q
    ||||||||||| ||| || | ||||||||| | || ||||||||||||| || ||| ||||||||||||    
T  117962 ataaaatttaagtagagactaatgttggaaacacgcctatttatagggacctaaaacataattaaccct 118030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 33475212 - 33475148
Alignment:
Q  4 aaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccc 68  Q
    ||||||||||||||||  ||||||||||| ||| |||||||| | |  ||||| |||||||||||    
T  33475212 aaatttaaatagggatcaatgttggaagctcgtttatttataagaactttaaacataattaaccc 33475148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 45046743 - 45046816
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccctaatat 74  Q
    ||||||||||| |||||| | ||||||||| |||||||||||||||||| |||||| |||||||||||||||||    
T  45046743 ataaaatttaagtagggactaatgttggaaacgcgtctatttatagggaccttaaagataattaaccctaatat 45046816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 10321448 - 10321394
Alignment:
Q  22 atgttggaagcgcgtctatttatagggatcttaaatataattaaccctaatattt 76  Q
    ||||||||| |||| |||||||||||||||| ||| ||||||||||||| |||||    
T  10321448 atgttggaaacgcgcctatttatagggatctaaaacataattaaccctattattt 10321394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 31318084 - 31318153
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaacccta 70  Q
    ||||||||||| |||||| | ||||| ||| |||| ||||||||||||| || ||| |||||||||||||    
T  31318084 ataaaatttaagtagggactaatgttagaaacgcgcctatttatagggacctaaaacataattaacccta 31318153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 11669886 - 11669818
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccct 69  Q
    |||||||||||||||||| | ||||||||| |||| || |||||||||| || ||| | ||||||||||    
T  11669886 ataaaatttaaatagggactaatgttggaaacgcgcctttttatagggacctaaaacacaattaaccct 11669818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 15562692 - 15562628
Alignment:
Q  4 aaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccc 68  Q
    |||||||| |||||| | ||||||||| |||| ||||||||||||| || ||| |||||||||||    
T  15562692 aaatttaagtagggactaatgttggaaacgcgcctatttatagggacctaaaacataattaaccc 15562628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 25244132 - 25244180
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttataggga 49  Q
    |||||||||||||||| ||| ||||||||| |||| |||||||||||||    
T  25244132 ataaaatttaaataggaattaatgttggaaacgcgcctatttataggga 25244180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 44208641 - 44208569
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccctaata 73  Q
    ||||||||||| |||||| | |||||| || ||||||||||||||  || || ||| ||||||||||||||||    
T  44208641 ataaaatttaagtagggactaatgttgaaaacgcgtctatttataaagacctaaaacataattaaccctaata 44208569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 10322847 - 10322914
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccc 68  Q
    ||||||||||| |||||| | ||||||||| | || ||||||||||||| || ||| |||||||||||    
T  10322847 ataaaatttaagtagggactaatgttggaaactcgcctatttatagggacctaaaacataattaaccc 10322914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 35061344 - 35061411
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccc 68  Q
    ||||||||||| |||||| | |||||| || |||| ||||||||||||| || ||| |||||||||||    
T  35061344 ataaaatttaagtagggactaatgttgaaaacgcgcctatttatagggacctaaaacataattaaccc 35061411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 40171428 - 40171495
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccc 68  Q
    ||||||||||| ||| |||| ||||||||| |||  |||||||||| || |||||| |||||||||||    
T  40171428 ataaaatttaagtagagattaatgttggaaacgcacctatttatagagaccttaaacataattaaccc 40171495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 28162978 - 28162908
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccctaa 71  Q
    ||||||||| |||||||||  ||||||||||| ||  ||||| ||| || |||||| ||||||||||||||    
T  28162978 ataaaattttaatagggatcaatgttggaagctcgcttatttgtagagaccttaaacataattaaccctaa 28162908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 33688441 - 33688373
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccct 69  Q
    ||||||||||| |||| | | ||||||||| |||  ||||||||||||| || ||| ||||||||||||    
T  33688441 ataaaatttaagtaggaactaatgttggaaacgcacctatttatagggacctaaaacataattaaccct 33688373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 34513583 - 34513651
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccct 69  Q
    ||||||||| ||||||||   ||||||||||| ||  ||||| |||||| |||||| ||||||||||||    
T  34513583 ataaaattttaatagggaccaatgttggaagctcgcttatttgtagggaccttaaacataattaaccct 34513651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 35054950 - 35054882
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccct 69  Q
    ||||||||||| |||| | | |||||| ||  ||||||||||||||||| || ||| ||||||||||||    
T  35054950 ataaaatttaagtaggaactaatgttgaaaatgcgtctatttatagggacctaaaacataattaaccct 35054882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 45045267 - 45045199
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccct 69  Q
    |||||||||||||||||| | |||||||||  |||  |||||||||| |  ||||| ||||||||||||    
T  45045267 ataaaatttaaatagggactaatgttggaaatgcgcatatttataggaactttaaacataattaaccct 45045199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 13324080 - 13324159
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccctaatatttatga 80  Q
    ||||||||||| |||||| | ||||||||| |||| ||||||||||||| || ||| |||||||||||||| ||||||||    
T  13324080 ataaaatttaagtagggactaatgttggaaacgcgcctatttatagggacctaaaacataattaaccctaaaatttatga 13324159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 16472756 - 16472689
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccc 68  Q
    ||||||||||| |||||| | ||||||||| |||| ||||||||||||| || |||||||||||||||    
T  16472756 ataaaatttaagtagggactaatgttggaaacgcgcctatttatagggacctaaaatataattaaccc 16472689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 16477327 - 16477260
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccc 68  Q
    ||||||||||| |||||| | ||||||||| |||| ||||||||||||| || |||||||||||||||    
T  16477327 ataaaatttaagtagggactaatgttggaaacgcgcctatttatagggacctaaaatataattaaccc 16477260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 24451244 - 24451176
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccct 69  Q
    ||||||||||| |||||| | ||||||||| | || ||||||||||||| || ||||||||||||||||    
T  24451244 ataaaatttaagtagggactaatgttggaaacacgcctatttatagggacctaaaatataattaaccct 24451176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 39338048 - 39338116
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccct 69  Q
    ||||||||||| |||||| | ||||||||| | || |||||||||||||||| ||| ||||||||||||    
T  39338048 ataaaatttaagtagggactaatgttggaaacacgcctatttatagggatctaaaacataattaaccct 39338116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 42816082 - 42816014
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccct 69  Q
    ||||||||||| |||||| | ||||||||||| ||  |||||||||||| |||||| ||||||||||||    
T  42816082 ataaaatttaagtagggactaatgttggaagcacgcgtatttatagggaccttaaacataattaaccct 42816014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 39308342 - 39308272
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccctaa 71  Q
    ||||||||||| |||||| | | |||| || | |||||||||||||||| |||||| ||||||||||||||    
T  39308342 ataaaatttaagtagggactaaggttgaaaacacgtctatttatagggaccttaaacataattaaccctaa 39308272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 21575574 - 21575506
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccct 69  Q
    ||||||||||| |||| | | ||||||||| |||||||||||||| ||| || ||| ||||||||||||    
T  21575574 ataaaatttaagtaggaactaatgttggaaacgcgtctatttataaggacctaaaacataattaaccct 21575506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 22959799 - 22959867
Alignment:
Q  2 taaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaacccta 70  Q
    |||| |||||||||| | | ||||| ||| | |||||||||||||||| |||||| |||||||||||||    
T  22959799 taaattttaaataggaactaatgttagaaacacgtctatttatagggaccttaaacataattaacccta 22959867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 37705900 - 37705832
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccct 69  Q
    ||||||||||| |||||| | |||||| || |||| ||||||||||||| || ||| ||||||||||||    
T  37705900 ataaaatttaagtagggactaatgttgaaaacgcgcctatttatagggacctaaaacataattaaccct 37705832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 37707252 - 37707320
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccct 69  Q
    ||||||||||| |||||| | ||||||||| |||| || |||||||||| || ||| ||||||||||||    
T  37707252 ataaaatttaagtagggactaatgttggaaacgcgcctgtttatagggacctaaaacataattaaccct 37707320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 42817236 - 42817304
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccct 69  Q
    ||||||| ||| |||||| | ||||||||| | || ||||||||||||| |||||| ||||||||||||    
T  42817236 ataaaatataagtagggactaatgttggaaacacgcctatttatagggaccttaaacataattaaccct 42817304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 13322950 - 13322880
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccctaa 71  Q
    ||||||||||| |||||| | ||||||||| |  | ||||||||||||| || ||| ||||||||||||||    
T  13322950 ataaaatttaagtagggactaatgttggaaacatgcctatttatagggacctaaaacataattaaccctaa 13322880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 21136470 - 21136540
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccctaa 71  Q
    ||||||||||| |||||| | ||||||||| | || ||||||||||||| || ||| |||||||| |||||    
T  21136470 ataaaatttaagtagggactaatgttggaaacacgcctatttatagggacctaaaacataattaatcctaa 21136540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 39310648 - 39310725
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccctaatatttat 78  Q
    ||||||||||| |||| ||| |||||| || || | |||||| |||||| |||||| ||||||||||||  |||||||    
T  39310648 ataaaatttaagtaggaattaatgttgaaaacgtgcctatttctagggaccttaaacataattaacccttttatttat 39310725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 39336780 - 39336711
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaacccta 70  Q
    ||||||||||| |||||  | |||||||||  ||| ||||||||||||| || ||| |||||||||||||    
T  39336780 ataaaatttaagtagggtctaatgttggaaatgcgcctatttatagggacctaaaacataattaacccta 39336711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 36062567 - 36062499
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccct 69  Q
    ||||||||||||||| || | |||||| || |||| ||||||||| ||| || ||| ||||||||||||    
T  36062567 ataaaatttaaatagagactaatgttgaaaacgcgcctatttataaggacctaaaacataattaaccct 36062499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 22971659 - 22971591
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccct 69  Q
    ||||||||||| |||||| | ||||||||| |||| |||||||||||||||| ||| ||||||||||||    
T  22971659 ataaaatttaagtagggactgatgttggaaacgcgcctatttatagggatctaaaacataattaaccct 22971591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 23816739 - 23816807
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccct 69  Q
    ||||||||||| |||||| | ||||||||| |||| |||||||||||||||| ||| ||||||||||||    
T  23816739 ataaaatttaagtagggactgatgttggaaacgcgcctatttatagggatctaaaacataattaaccct 23816807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 15119370 - 15119440
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccctaa 71  Q
    ||||||||||| |||||| | ||||||||| | |  ||||||||||||| |||||| ||||||||||||||    
T  15119370 ataaaatttaagtagggactaatgttggaaacacacctatttatagggaccttaaacataattaaccctaa 15119440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 7852314 - 7852247
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccc 68  Q
    ||||||||||| |||||||| |||||| || | || ||||||||||||| || ||| |||||||||||    
T  7852314 ataaaatttaagtagggattaatgttgaaaacacgcctatttatagggacctaaaacataattaaccc 7852247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 36248099 - 36248032
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccc 68  Q
    ||||||||||| |||||| | ||||||||| |||||||||||||||||| || ||| |||||||||||    
T  36248099 ataaaatttaagtagggactaatgttggaaacgcgtctatttatagggacctaaaacataattaaccc 36248032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 21795922 - 21795994
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccctaata 73  Q
    ||||||||||| |||||| | |||||| || | |||||||||||||||| |||||| |||||| |||||||||    
T  21795922 ataaaatttaagtagggactgatgttgtaaacacgtctatttatagggaccttaaacataatttaccctaata 21795994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 37987223 - 37987290
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccc 68  Q
    ||||||||||| |||||| | ||||||||| |||| ||||||||||||| || ||| |||||||||||    
T  37987223 ataaaatttaagtagggactaatgttggaaacgcgcctatttatagggacctaaaacataattaaccc 37987290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 12368740 - 12368806
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaacc 67  Q
    ||||||||||| |||||| | ||||||||| |||| ||||||||||||| || ||| ||||||||||    
T  12368740 ataaaatttaagtagggactaatgttggaaacgcgcctatttatagggacctaaaacataattaacc 12368806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 12251914 - 12251982
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccct 69  Q
    ||||||||||||||||||   ||||||||||| ||  ||||||||||||  ||||| ||||||||||||    
T  12251914 ataaaatttaaatagggaccaatgttggaagctcgcttatttatagggactttaaacataattaaccct 12251982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 12898919 - 12898987
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccct 69  Q
    |||||||||||||||| |   ||||||||||| ||  |||||||||||| |||||| ||||||||||||    
T  12898919 ataaaatttaaataggaaccaatgttggaagctcgcttatttatagggaccttaaacataattaaccct 12898987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 15053412 - 15053345
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccc 68  Q
    ||||||||||| |||||| | |||||| || |||| ||||||||||||| || ||| |||||||||||    
T  15053412 ataaaatttaagtagggactaatgttgaaaacgcgcctatttatagggacctaaaacataattaaccc 15053345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 29232174 - 29232241
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccc 68  Q
    ||||||||||| |||||||| |||||||||   || ||||||||||||| || ||| |||||||||||    
T  29232174 ataaaatttaagtagggattaatgttggaaatacgcctatttatagggacctaaaacataattaaccc 29232241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 27552046 - 27552116
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccctaa 71  Q
    ||||||||||||||||||   |||||  |||| ||  |||||||||||| |||||| ||||||||||||||    
T  27552046 ataaaatttaaatagggaccaatgttaaaagctcgcttatttatagggaccttaaacataattaaccctaa 27552116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 51338206 - 51338140
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaacc 67  Q
    |||||||||||||||| |   ||||||||| | ||  ||||| ||||||||||||||||||||||||    
T  51338206 ataaaatttaaataggaaccaatgttggaaactcgcttatttgtagggatcttaaatataattaacc 51338140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 51839961 - 51839891
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccctaa 71  Q
    ||||||||||||||||||   ||||||||||| ||  ||||||||||||  ||||| |||||||| |||||    
T  51839961 ataaaatttaaatagggaccaatgttggaagctcgcttatttatagggactttaaacataattaatcctaa 51839891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 27550538 - 27550461
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccctaatatttat 78  Q
    |||||||||||||||||||  ||||||||||| |   |||||||||| |  ||||| ||||||||||||  |||||||    
T  27550538 ataaaatttaaatagggatcaatgttggaagctcacttatttataggtactttaaacataattaacccttttatttat 27550461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 25351713 - 25351646
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccct 69  Q
    ||||||||| ||||||||   ||||||||||| ||| ||||| |||||| |||||| ||||||||||||    
T  25351713 ataaaattttaatagggaccaatgttggaagctcgtttatttgtaggga-cttaaacataattaaccct 25351646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 30981516 - 30981448
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccct 69  Q
    ||||||||||| |||||| | ||||||||| |||| |||| ||| |||| || ||| ||||||||||||    
T  30981516 ataaaatttaagtagggactaatgttggaaacgcgcctatatatcgggacctaaaacataattaaccct 30981448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 37985974 - 37985907
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccct 69  Q
    |||||||||||||||||| | |||||| || | ||||||||||||  ||||| ||| ||||||||||||    
T  37985974 ataaaatttaaatagggactaatgttgcaaacacgtctatttata-agatctaaaacataattaaccct 37985907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 41140150 - 41140219
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaacccta 70  Q
    ||||||||||| |||||| | ||||||||| |||| ||||||||||||| || ||| |||||||||||||    
T  41140150 ataaaatttaagtagggactaatgttggaaacgcgcctatttatagggacctaaaacataattaacccta 41140219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 13921182 - 13921249
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccc 68  Q
    |||||||||||||||||| | ||||||||| |||| ||||||||| ||| || ||| |||||||||||    
T  13921182 ataaaatttaaatagggactaatgttggaaacgcgcctatttataaggacctaaaacataattaaccc 13921249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 23318065 - 23318133
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccct 69  Q
    ||||||||||| |||||| | ||||||||| | || ||||||||||||| || ||| ||||||||||||    
T  23318065 ataaaatttaagtagggactaatgttggaaacacgcctatttatagggacctaaaacataattaaccct 23318133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 26866207 - 26866275
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccct 69  Q
    ||||||||||| |||||| | ||||||||| | || ||||||||||||| || ||| ||||||||||||    
T  26866207 ataaaatttaagtagggactaatgttggaaacacgcctatttatagggacctaaaacataattaaccct 26866275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 34527630 - 34527698
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccct 69  Q
    ||||||||||| |||| ||| ||||||||| | || |||||||||| ||||| ||| ||||||||||||    
T  34527630 ataaaatttaagtaggaattaatgttggaaacacgcctatttatagagatctaaaacataattaaccct 34527698  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 41138792 - 41138725
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccc 68  Q
    ||||||||||| |||||| | ||||||||  |||| ||||||||||||| || ||| |||||||||||    
T  41138792 ataaaatttaagtagggactaatgttggagacgcgcctatttatagggacctaaaacataattaaccc 41138725  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 9168531 - 9168465
Alignment:
Q  2 taaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccc 68  Q
    |||||||||||||||||   ||||||||||| ||  ||||||||||||  ||||| |||||||||||    
T  9168531 taaaatttaaatagggaccaatgttggaagctcgcttatttatagggactttaaacataattaaccc 9168465  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 19193069 - 19193139
Alignment:
Q  5 aatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccctaatatt 75  Q
    ||||| |||||||||| ||||||||||| ||  ||||| ||||   |||||| ||||||||||||||||||    
T  19193069 aattttaatagggattaatgttggaagctcgcttatttgtaggatccttaaacataattaaccctaatatt 19193139  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 23312723 - 23312658
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaac 66  Q
    ||||||||||| |||| ||| ||||||||| | || ||||||||||||| || ||| |||||||||    
T  23312723 ataaaatttaagtaggaattaatgttggaaacacgcctatttatagggacctaaaacataattaac 23312658  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 37812028 - 37811956
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccctaata 73  Q
    ||||||||| | ||||||   ||||||||||| ||  ||||| |||||| |||||| ||||||||||||||||    
T  37812028 ataaaattttagtagggaccaatgttggaagctcgcttatttgtagggaccttaaacataattaaccctaata 37811956  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 44492647 - 44492579
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccct 69  Q
    ||||||||||| || ||||| ||||||||| |||| ||||||||||||| || ||| ||||||||||||    
T  44492647 ataaaatttaagtatggattaatgttggaaacgcgcctatttatagggacctaaaacataattaaccct 44492579  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 21439062 - 21438994
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccct 69  Q
    ||||||||||| ||  || | ||||||||| |||| |||||||||||||||| ||| ||||||||||||    
T  21439062 ataaaatttaagtatagactaatgttggaaacgcgcctatttatagggatctaaaacataattaaccct 21438994  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 9111313 - 9111246
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccc 68  Q
    |||||||||||||||||||  ||||||||||| ||| |||||||| | |  ||||| |||||||||||    
T  9111313 ataaaatttaaatagggatcaatgttggaagctcgtttatttataagaactttaaacataattaaccc 9111246  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 3105939 - 3106005
Alignment:
Q  3 aaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccct 69  Q
    ||||||||| |||||| | ||||||||| |||  ||||||||||||| || ||| ||||||||||||    
T  3105939 aaaatttaagtagggactaatgttggaaacgcacctatttatagggacctaaaacataattaaccct 3106005  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 33001391 - 33001457
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaacc 67  Q
    |||||||||||  ||||| | ||||||||| | |||||||||||||||| || ||| ||||||||||    
T  33001391 ataaaatttaagcagggactaatgttggaaacacgtctatttatagggacctaaaacataattaacc 33001457  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 18673341 - 18673386
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatag 46  Q
    |||||||||||||||||||| ||||||||| | || ||||||||||    
T  18673341 ataaaatttaaatagggattaatgttggaaacacgcctatttatag 18673386  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 20719566 - 20719614
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttataggga 49  Q
    ||||||||||| |||||| | ||||||||| |||| |||||||||||||    
T  20719566 ataaaatttaagtagggactaatgttggaaacgcgcctatttataggga 20719614  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 38198828 - 38198761
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccc 68  Q
    |||||||||||||||||| | ||||||||| | || ||||||||||||| || ||| |||||||||||    
T  38198828 ataaaatttaaatagggactaatgttggaaacacgcctatttatagggacctaaaacataattaaccc 38198761  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 43831978 - 43832047
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaacccta 70  Q
    ||||||||||| |||||| | |||||| || |||| |||||||||| || |||||| |||||||||||||    
T  43831978 ataaaatttaagtagggactaatgttgaaaacgcgcctatttatagagaccttaaacataattaacccta 43832047  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 38875088 - 38875155
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccc 68  Q
    ||||||||||| ||| || | ||||||||||| ||  |||||||||||| |||||| |||||||||||    
T  38875088 ataaaatttaagtagagactaatgttggaagcacgcttatttatagggaccttaaacataattaaccc 38875155  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 33625935 - 33626005
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccctaa 71  Q
    ||||||||||| |||| | | ||| ||||| | |||||||||||||||| || ||| ||||||||||||||    
T  33625935 ataaaatttaagtaggaactaatgatggaaacacgtctatttatagggacctaaaacataattaaccctaa 33626005  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 38873946 - 38873881
Alignment:
Q  3 aaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccc 68  Q
    ||||||||| |||||| | |||||| ||  ||| ||||||||||||| |||||| |||||||||||    
T  38873946 aaaatttaagtagggactaatgttgaaaatgcgcctatttatagggaccttaaacataattaaccc 38873881  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 43309645 - 43309714
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaacccta 70  Q
    ||||||||||| ||| |||| |||||| || | || ||||||||||||| |||||| || ||||||||||    
T  43309645 ataaaatttaagtagagattaatgttgaaaacacgcctatttatagggaccttaaacatgattaacccta 43309714  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 12622124 - 12622191
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccct 69  Q
    ||||||||||||||||||   |||||| |||| ||  |||||||||||| |||||| ||||||||||||    
T  12622124 ataaaatttaaatagggaccaatgttgaaagctcgcttatttataggga-cttaaagataattaaccct 12622191  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 46043433 - 46043365
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccct 69  Q
    ||||||||||| |||||| | ||||||||| ||||  |||||||||| | || ||| ||||||||||||    
T  46043433 ataaaatttaagtagggactaatgttggaaacgcgcatatttataggaacctaaaacataattaaccct 46043365  T

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Target: scaffold0651 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0651
Description:

Target: scaffold0651; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 5586 - 5517
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaacccta 70  Q
    ||||||||||| |||||| | ||||| ||| |||| ||||||||||||| || ||| |||||||||||||    
T  5586 ataaaatttaagtagggactaatgttagaaacgcgcctatttatagggacctaaaacataattaacccta 5517  T

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Target: scaffold0093 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 49285 - 49353
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaaccct 69  Q
    ||||||||||| |||||| | ||||||||| | || ||||||||||||| || ||| ||||||||||||    
T  49285 ataaaatttaagtagggactaatgttggaaacacgcctatttatagggacctaaaacataattaaccct 49353  T

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Target: scaffold0005 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 282678 - 282609
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttatagggatcttaaatataattaacccta 70  Q
    ||||||||||||||||||   ||||||||| | ||  ||||||||||||  ||||| |||||||||||||    
T  282678 ataaaatttaaatagggaccaatgttggaaactcgcttatttatagggactttaaacataattaacccta 282609  T

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Target: scaffold0097 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 23404 - 23452
Alignment:
Q  1 ataaaatttaaatagggattcatgttggaagcgcgtctatttataggga 49  Q
    ||||||||||| |||||| | ||||||||| |||| |||||||||||||    
T  23404 ataaaatttaagtagggactaatgttggaaacgcgcctatttataggga 23452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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