View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1920_low_3 (Length: 321)

Name: NF1920_low_3
Description: NF1920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1920_low_3
NF1920_low_3
[»] chr3 (24 HSPs)
chr3 (18-247)||(29838627-29838856)
chr3 (197-251)||(27934451-27934505)
chr3 (197-251)||(50645472-50645526)
chr3 (198-282)||(16056350-16056434)
chr3 (198-251)||(21323217-21323270)
chr3 (195-251)||(42093723-42093779)
chr3 (197-251)||(46962911-46962965)
chr3 (197-251)||(52835545-52835599)
chr3 (197-251)||(49499843-49499897)
chr3 (192-247)||(17109742-17109797)
chr3 (194-249)||(26582943-26582998)
chr3 (197-251)||(7029385-7029439)
chr3 (197-251)||(27284970-27285024)
chr3 (197-251)||(49121715-49121769)
chr3 (197-249)||(32315706-32315758)
chr3 (197-251)||(33162649-33162703)
chr3 (198-244)||(38807539-38807585)
chr3 (197-246)||(14546170-14546219)
chr3 (192-249)||(29838289-29838346)
chr3 (197-251)||(19590438-19590492)
chr3 (197-251)||(55092205-55092259)
chr3 (213-249)||(8510475-8510511)
chr3 (197-249)||(38807869-38807921)
chr3 (197-249)||(46962582-46962634)
[»] chr4 (30 HSPs)
chr4 (191-282)||(5720947-5721038)
chr4 (197-251)||(16960093-16960147)
chr4 (197-251)||(989404-989458)
chr4 (197-251)||(11021673-11021727)
chr4 (197-247)||(17864947-17864997)
chr4 (197-246)||(13493219-13493268)
chr4 (186-247)||(22487209-22487270)
chr4 (197-250)||(46480946-46480999)
chr4 (192-251)||(4712174-4712233)
chr4 (192-251)||(13682999-13683058)
chr4 (197-282)||(4712475-4712560)
chr4 (197-251)||(12792901-12792954)
chr4 (197-251)||(37815341-37815395)
chr4 (197-251)||(43749947-43750001)
chr4 (194-251)||(26314804-26314861)
chr4 (201-245)||(2184730-2184774)
chr4 (197-249)||(17107432-17107484)
chr4 (197-282)||(32593037-32593122)
chr4 (197-251)||(39385491-39385545)
chr4 (197-249)||(13492884-13492936)
chr4 (197-249)||(17865307-17865359)
chr4 (197-251)||(9301898-9301951)
chr4 (197-251)||(16959763-16959817)
chr4 (211-249)||(19321805-19321843)
chr4 (197-246)||(17107765-17107814)
chr4 (192-249)||(22487549-22487606)
chr4 (197-249)||(26314476-26314528)
chr4 (211-251)||(29420481-29420521)
chr4 (197-249)||(37815673-37815725)
chr4 (213-249)||(43368483-43368519)
[»] chr6 (26 HSPs)
chr6 (197-251)||(5923826-5923880)
chr6 (197-251)||(3345348-3345402)
chr6 (191-249)||(29819409-29819467)
chr6 (197-251)||(19661678-19661732)
chr6 (193-250)||(5140686-5140743)
chr6 (197-251)||(8926187-8926241)
chr6 (197-251)||(8936444-8936498)
chr6 (197-251)||(30609195-30609249)
chr6 (198-251)||(5404601-5404654)
chr6 (197-251)||(31717175-31717229)
chr6 (198-248)||(33783730-33783780)
chr6 (197-249)||(28853484-28853536)
chr6 (197-246)||(3484783-3484832)
chr6 (198-251)||(16525197-16525250)
chr6 (197-249)||(17238032-17238084)
chr6 (193-244)||(18772869-18772920)
chr6 (197-251)||(5404899-5404953)
chr6 (197-251)||(5409224-5409278)
chr6 (211-249)||(14655919-14655957)
chr6 (197-251)||(26272309-26272363)
chr6 (211-251)||(1214712-1214752)
chr6 (211-251)||(6564598-6564638)
chr6 (213-249)||(10091054-10091090)
chr6 (189-249)||(10910910-10910970)
chr6 (197-249)||(17238365-17238417)
chr6 (197-245)||(19661350-19661398)
[»] chr2 (32 HSPs)
chr2 (197-251)||(14379442-14379496)
chr2 (197-251)||(13572472-13572526)
chr2 (197-282)||(18369310-18369395)
chr2 (197-251)||(29683176-29683230)
chr2 (191-251)||(2395151-2395211)
chr2 (197-249)||(25318625-25318677)
chr2 (197-249)||(37609286-37609338)
chr2 (197-251)||(38873474-38873528)
chr2 (198-251)||(7877654-7877707)
chr2 (197-249)||(41594282-41594334)
chr2 (197-247)||(19204592-19204642)
chr2 (197-282)||(28921194-28921279)
chr2 (186-244)||(42704978-42705036)
chr2 (197-249)||(3371302-3371354)
chr2 (197-249)||(30432926-30432978)
chr2 (192-251)||(12806543-12806602)
chr2 (197-251)||(17458047-17458101)
chr2 (197-249)||(2395488-2395540)
chr2 (197-249)||(18369013-18369065)
chr2 (197-249)||(29683505-29683557)
chr2 (197-249)||(33940681-33940733)
chr2 (197-248)||(12806881-12806932)
chr2 (211-249)||(146636-146674)
chr2 (197-251)||(6164227-6164281)
chr2 (197-247)||(6880306-6880356)
chr2 (197-242)||(13278064-13278110)
chr2 (211-249)||(30215817-30215855)
chr2 (192-246)||(42705286-42705340)
chr2 (188-249)||(30432587-30432648)
chr2 (197-249)||(6880002-6880054)
chr2 (213-249)||(41693692-41693728)
chr2 (211-251)||(42695884-42695924)
[»] scaffold0817 (2 HSPs)
scaffold0817 (197-251)||(3983-4037)
scaffold0817 (197-249)||(4313-4365)
[»] scaffold0137 (2 HSPs)
scaffold0137 (197-251)||(37064-37118)
scaffold0137 (197-249)||(36767-36819)
[»] chr8 (24 HSPs)
chr8 (197-251)||(31186374-31186428)
chr8 (201-251)||(26479623-26479673)
chr8 (197-249)||(13154239-13154291)
chr8 (197-282)||(220513-220598)
chr8 (197-282)||(689668-689753)
chr8 (197-282)||(734136-734221)
chr8 (197-282)||(858032-858117)
chr8 (197-251)||(3272749-3272803)
chr8 (197-251)||(6943657-6943711)
chr8 (197-251)||(18764614-18764668)
chr8 (197-246)||(6891779-6891828)
chr8 (197-245)||(31403248-31403296)
chr8 (199-251)||(31685672-31685724)
chr8 (197-243)||(9180045-9180091)
chr8 (193-243)||(37586353-37586403)
chr8 (192-245)||(2835120-2835173)
chr8 (186-249)||(18549519-18549582)
chr8 (192-247)||(18764280-18764335)
chr8 (198-249)||(31186675-31186726)
chr8 (197-251)||(3273049-3273103)
chr8 (191-245)||(13405442-13405496)
chr8 (197-226)||(20112426-20112455)
chr8 (197-245)||(6943992-6944040)
chr8 (213-249)||(32040093-32040129)
[»] chr1 (23 HSPs)
chr1 (197-251)||(20062127-20062181)
chr1 (191-247)||(28031641-28031697)
chr1 (197-251)||(18963609-18963663)
chr1 (197-251)||(33619225-33619279)
chr1 (197-247)||(50616939-50616989)
chr1 (197-247)||(50624766-50624816)
chr1 (197-249)||(26244549-26244601)
chr1 (197-247)||(14602010-14602060)
chr1 (197-249)||(50096133-50096185)
chr1 (197-251)||(33557-33611)
chr1 (197-251)||(10913775-10913828)
chr1 (197-251)||(12322092-12322146)
chr1 (197-251)||(37172577-37172631)
chr1 (192-249)||(50625095-50625152)
chr1 (191-251)||(14602337-14602397)
chr1 (197-249)||(20061798-20061850)
chr1 (197-249)||(28031978-28032030)
chr1 (211-249)||(10887249-10887287)
chr1 (197-226)||(39027699-39027728)
chr1 (193-249)||(4789306-4789362)
chr1 (197-249)||(37172248-37172300)
chr1 (189-249)||(39747781-39747841)
chr1 (197-249)||(42154780-42154831)
[»] chr5 (22 HSPs)
chr5 (198-249)||(18786311-18786362)
chr5 (197-251)||(10461674-10461728)
chr5 (197-251)||(14868677-14868731)
chr5 (197-251)||(40589581-40589635)
chr5 (197-251)||(43197230-43197284)
chr5 (197-251)||(6542587-6542641)
chr5 (197-251)||(15969430-15969484)
chr5 (197-251)||(40588978-40589032)
chr5 (197-251)||(5933454-5933508)
chr5 (191-249)||(6497523-6497581)
chr5 (197-243)||(41137141-41137187)
chr5 (197-249)||(3598413-3598465)
chr5 (197-249)||(22394124-22394176)
chr5 (197-249)||(24491174-24491226)
chr5 (211-249)||(4736488-4736526)
chr5 (197-282)||(24490844-24490929)
chr5 (211-249)||(28871653-28871691)
chr5 (198-251)||(4122906-4122959)
chr5 (198-251)||(18785983-18786035)
chr5 (197-249)||(5933125-5933177)
chr5 (198-246)||(14869006-14869054)
chr5 (213-249)||(38496728-38496764)
[»] chr7 (20 HSPs)
chr7 (197-251)||(24687-24741)
chr7 (189-251)||(19476385-19476447)
chr7 (197-251)||(44219623-44219677)
chr7 (197-249)||(40729092-40729144)
chr7 (197-247)||(19157695-19157745)
chr7 (197-247)||(20757094-20757144)
chr7 (197-251)||(42516867-42516921)
chr7 (201-251)||(44483233-44483283)
chr7 (197-249)||(35026445-35026497)
chr7 (197-251)||(34595648-34595702)
chr7 (197-246)||(22364985-22365034)
chr7 (197-249)||(13426623-13426675)
chr7 (192-246)||(44219289-44219343)
chr7 (197-249)||(19158024-19158076)
chr7 (197-249)||(20757423-20757475)
chr7 (197-244)||(34487142-34487189)
chr7 (197-249)||(24356-24408)
chr7 (213-249)||(1974027-1974063)
chr7 (197-249)||(22364657-22364709)
chr7 (213-249)||(46304330-46304366)
[»] scaffold0167 (1 HSPs)
scaffold0167 (197-251)||(4716-4770)
[»] scaffold0028 (1 HSPs)
scaffold0028 (197-251)||(73933-73987)
[»] scaffold0021 (1 HSPs)
scaffold0021 (194-248)||(118026-118080)
[»] scaffold0103 (1 HSPs)
scaffold0103 (197-251)||(43607-43661)
[»] scaffold0045 (1 HSPs)
scaffold0045 (197-247)||(43910-43960)
[»] scaffold0006 (1 HSPs)
scaffold0006 (197-251)||(212741-212795)
[»] scaffold0126 (1 HSPs)
scaffold0126 (197-251)||(36322-36376)


Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 29838856 - 29838627
Alignment:
Q  18 attatggtcccaattatggaacggtgttgaaattgtttccaagttgctaggtggattaatctcacatgataagaatttaggtattagatatcacgnnnnn 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |         
T  29838856 attatggtcccaattatggaacggtgttgaaattgtttccaagttgctaggtggattaatctcacatgataagaatttaggtattagatatcaggaaaaa 29838757  T
Q  118 nnnntgtttgaacaaaaacaaacccttataccaaagtttgaacaatcttgtaatttcattttaaaacttatataatagacttaaatatggaaatggtccc 217  Q
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  29838756 aaaatgtttgaacaaaaacaaacccttataccaaagtttgaacaatcttgtaatttcattttgaaacttatataataggcttaaatatggaaatggtccc 29838657  T
Q  218 tgcaaatatcttgcgttttggttttagtcc 247  Q
    ||||||||||||||||||||||||||||||    
T  29838656 tgcaaatatcttgcgttttggttttagtcc 29838627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 27934451 - 27934505
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27934451 cttaaatatggaaatggtccctgcaaatatctggcgttttggttttagtccctat 27934505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 50645472 - 50645526
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  50645472 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagttcctat 50645526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 198 - 282
Target Start/End: Original strand, 16056350 - 16056434
Alignment:
Q  198 ttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctatnnnnnnnnnttttggttttagtccctgcaaa 282  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||||||||         ||||||||||||||||||||||    
T  16056350 ttaaatatggaattggtccctgcaaatatctggcgttttggttttagtccctataaaaatattttttggttttagtccctgcaaa 16056434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 21323270 - 21323217
Alignment:
Q  198 ttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  21323270 ttaaatatggaaatggtccctgcaaatatctagcgttttggttttagtccctat 21323217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 42093779 - 42093723
Alignment:
Q  195 gacttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  42093779 gacttaaatatggaaatggtccctgcaaatatctggcgttttgattttagtccctat 42093723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 46962965 - 46962911
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  46962965 cttaaatatggaaatggtccctgcaaatatctggcgtattggttttagtccctat 46962911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 52835545 - 52835599
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  52835545 cttaaatatggaaatggtccctgcaaatatctggcgttttgattttagtccctat 52835599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 49499843 - 49499897
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||||||||||| ||||||||||| | ||||||||||||||||||||    
T  49499843 cttaaatatggaaatggtccttgcaaatatctggtgttttggttttagtccctat 49499897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 17109742 - 17109797
Alignment:
Q  192 atagacttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtcc 247  Q
    ||||||||||||||| |||| |||||||||||||||| || |||||||||||||||    
T  17109742 atagacttaaatatgaaaatagtccctgcaaatatctagcattttggttttagtcc 17109797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 249
Target Start/End: Complemental strand, 26582998 - 26582943
Alignment:
Q  194 agacttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    |||||||||||||||||||||||||||||||||||  | ||||| |||||||||||    
T  26582998 agacttaaatatggaaatggtccctgcaaatatctgacattttgattttagtccct 26582943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 7029385 - 7029439
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||||||||| ||||||||||||| ||||||| ||| ||||||||||    
T  7029385 cttaaatatggaaatggttcctgcaaatatctggcgtttttgttctagtccctat 7029439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 27284970 - 27285024
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||||||||||||||||||||||| || ||||| ||||||| |||||    
T  27284970 cttaaatatggaaatggtccctgcaaatatctggcattttgattttagttcctat 27285024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 49121715 - 49121769
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||||||||||||||||||||||| || ||||| |||||| ||||||    
T  49121715 cttaaatatggaaatggtccctgcaaatatctggcattttgattttagcccctat 49121769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 32315758 - 32315706
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    ||||||||||||||||||||||||||||||||    |||||||||||||||||    
T  32315758 cttaaatatggaaatggtccctgcaaatatctgatattttggttttagtccct 32315706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 33162703 - 33162649
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    ||||||||||||||||||||| | ||||||||  |||||| ||||||||||||||    
T  33162703 cttaaatatggaaatggtccccgtaaatatctgacgttttagttttagtccctat 33162649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 244
Target Start/End: Original strand, 38807539 - 38807585
Alignment:
Q  198 ttaaatatggaaatggtccctgcaaatatcttgcgttttggttttag 244  Q
    ||||||||| |||||||||||| |||||||| |||||||||||||||    
T  38807539 ttaaatatgaaaatggtccctgtaaatatctggcgttttggttttag 38807585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 14546219 - 14546170
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtc 246  Q
    ||||||||||||||||||||||||||||||||  | ||||||||| ||||    
T  14546219 cttaaatatggaaatggtccctgcaaatatctgacattttggtttcagtc 14546170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 29838289 - 29838346
Alignment:
Q  192 atagacttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    ||||||||||||||| |||| ||||||||||||||||    |||||||||||||||||    
T  29838289 atagacttaaatatgaaaatagtccctgcaaatatctgatattttggttttagtccct 29838346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 19590438 - 19590492
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||||| |||| ||||||||||||  ||||||| |||||||| ||||    
T  19590438 cttaaatatggaaacggtctctgcaaatatctgacgttttgattttagtcgctat 19590492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 55092205 - 55092259
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||| ||||| |||||| ||||||||  |||||||||||||||| ||||    
T  55092205 cttaaatatgaaaatgatccctgtaaatatctgacgttttggttttagtctctat 55092259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 8510511 - 8510475
Alignment:
Q  213 gtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    |||||||||||||| || |||||||||||||||||||    
T  8510511 gtccctgcaaatatgtttcgttttggttttagtccct 8510475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 38807921 - 38807869
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    ||||||||||||||| ||||||| ||||||||  | ||||| |||||||||||    
T  38807921 cttaaatatggaaatagtccctgtaaatatctgacattttgattttagtccct 38807869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 46962582 - 46962634
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    |||||||||| |||| ||||||||||||||||    |||||||||||||||||    
T  46962582 cttaaatatgaaaatagtccctgcaaatatctgatattttggttttagtccct 46962634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 191 - 282
Target Start/End: Original strand, 5720947 - 5721038
Alignment:
Q  191 aatagacttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctatnnnnnnnnnttttggttttagtccctgcaaa 282  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||         ||||||||||||||||||||||    
T  5720947 aataggcttaaatatggaaatggtccctgcaaatatctggcgttttggttttagtccctataaaaatattttttggttttagtccctgcaaa 5721038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 16960147 - 16960093
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  16960147 cttaaatatggaaatggtccctgcaaatatcttgcattttggttttagtccctat 16960093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 989458 - 989404
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  989458 cttaaatatggaaatggtccctgcaaatatctgacgttttggttttagtccctat 989404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 11021673 - 11021727
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||    
T  11021673 cttaaatatgaaaatggtccctacaaatatctggcgttttggttttagtccctat 11021727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 17864947 - 17864997
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtcc 247  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  17864947 cttaaatatggaaatggtccttgcaaatatctggcgttttggttttagtcc 17864997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 13493268 - 13493219
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtc 246  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||    
T  13493268 cttaaatatggaaatggtccctgcaaatatttagcgttttggttttagtc 13493219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 22487209 - 22487270
Alignment:
Q  186 tatataatagacttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtcc 247  Q
    |||||| ||| ||||||||||||||||||||| |||||||||| | ||||||||||||||||    
T  22487209 tatatattaggcttaaatatggaaatggtccccgcaaatatctggtgttttggttttagtcc 22487270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 46480946 - 46480999
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtcccta 250  Q
    |||||||||| ||||||||| ||||||||||| |||||||||||||||||||||    
T  46480946 cttaaatatgaaaatggtccttgcaaatatctggcgttttggttttagtcccta 46480999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 4712174 - 4712233
Alignment:
Q  192 atagacttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||| |||||||||| ||||||||||||||||||| | |||||||||||||||| |||||    
T  4712174 ataggcttaaatatgaaaatggtccctgcaaatatttggcgttttggttttagttcctat 4712233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 13682999 - 13683058
Alignment:
Q  192 atagacttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||| |||||||||||||||| |||||||||||||||  | |||||||||||||||||||    
T  13682999 ataggcttaaatatggaaatgatccctgcaaatatctgacattttggttttagtccctat 13683058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 282
Target Start/End: Complemental strand, 4712560 - 4712475
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctatnnnnnnnnnttttggttttagtccctgcaaa 282  Q
    |||||||||| |||| ||||||||||||||||  | |||||||||||||||||||         ||||||||||||||||||||||    
T  4712560 cttaaatatgaaaatagtccctgcaaatatctgacattttggttttagtccctataaaaatattttttggttttagtccctgcaaa 4712475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 12792954 - 12792901
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||||||||||| ||||||||||| || |||||||||||||||||||    
T  12792954 cttaaatatggaaatggtcc-tgcaaatatctagcattttggttttagtccctat 12792901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 37815341 - 37815395
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    ||||||||||||||||||||||| |||||||| || |||||| ||||||||||||    
T  37815341 cttaaatatggaaatggtccctgtaaatatctggcattttggatttagtccctat 37815395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 43749947 - 43750001
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||||||||||||||||||||||| | |||||| ||||||| |||||    
T  43749947 cttaaatatggaaatggtccctgcaaatatctggtgttttgattttagttcctat 43750001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 251
Target Start/End: Complemental strand, 26314861 - 26314804
Alignment:
Q  194 agacttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    ||||||||||||||||||| |||  |||||||||| |||||||||||||| |||||||    
T  26314861 agacttaaatatggaaatgttcctggcaaatatctggcgttttggttttaatccctat 26314804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 201 - 245
Target Start/End: Complemental strand, 2184774 - 2184730
Alignment:
Q  201 aatatggaaatggtccctgcaaatatcttgcgttttggttttagt 245  Q
    ||||||||||||||||||||||||||||  |||||||||||||||    
T  2184774 aatatggaaatggtccctgcaaatatctgacgttttggttttagt 2184730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 17107432 - 17107484
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    ||||||||||||||||||||||| |||||| | ||||||| ||||||||||||    
T  17107432 cttaaatatggaaatggtccctgaaaatatttggcgttttagttttagtccct 17107484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 282
Target Start/End: Complemental strand, 32593122 - 32593037
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctatnnnnnnnnnttttggttttagtccctgcaaa 282  Q
    |||||||||||||||||| || ||||||||||| | ||||||||||| ||| |||         ||||||||||||||||||||||    
T  32593122 cttaaatatggaaatggttccagcaaatatcttacattttggttttaatccttataaaataattttttggttttagtccctgcaaa 32593037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 39385545 - 39385491
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||||||||||||| |||||||||  ||||||| ||||| |||||||    
T  39385545 cttaaatatggaaatggtccctacaaatatctgacgttttgcttttaatccctat 39385491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 13492884 - 13492936
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    |||||||||| |||| ||||||||||||||||  | |||||||||||||||||    
T  13492884 cttaaatatgaaaatagtccctgcaaatatctgactttttggttttagtccct 13492936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 17865359 - 17865307
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    |||||||||| |||| ||||||||||||||||  | |||||||||||||||||    
T  17865359 cttaaatatgaaaatagtccctgcaaatatctgacattttggttttagtccct 17865307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 9301951 - 9301898
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||||||||| || |||||||||| |||||||| |||||||| ||||    
T  9301951 cttaaatatggaaatggt-ccagcaaatatctggcgttttgattttagtctctat 9301898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 16959763 - 16959817
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||| |||| ||||||||||||||||  | |||| ||||||||||||||    
T  16959763 cttaaatatgaaaatagtccctgcaaatatctgacattttagttttagtccctat 16959817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 249
Target Start/End: Complemental strand, 19321843 - 19321805
Alignment:
Q  211 tggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    |||||||||||||||| || |||||||||||||||||||    
T  19321843 tggtccctgcaaatatgtttcgttttggttttagtccct 19321805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 17107814 - 17107765
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtc 246  Q
    |||||||||| |||| ||||||||||||||||  | ||||||||||||||    
T  17107814 cttaaatatgaaaatagtccctgcaaatatctgacattttggttttagtc 17107765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 22487606 - 22487549
Alignment:
Q  192 atagacttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    |||| |||||||||| |||| |||||||||||||| |  | |||||||||||||||||    
T  22487606 ataggcttaaatatgaaaatagtccctgcaaatatttgacattttggttttagtccct 22487549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 26314476 - 26314528
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    ||||||| || |||| ||||||||||||||||  | |||||||||||||||||    
T  26314476 cttaaatgtgaaaatagtccctgcaaatatctgacattttggttttagtccct 26314528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 29420521 - 29420481
Alignment:
Q  211 tggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||||||| |  |||||||||||||||||||||    
T  29420521 tggtccctgcaaatatgtctcgttttggttttagtccctat 29420481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 37815725 - 37815673
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    |||||||||| |||| ||||| ||||||||||  | |||||||||||||||||    
T  37815725 cttaaatatgaaaattgtcccagcaaatatctgacattttggttttagtccct 37815673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 43368483 - 43368519
Alignment:
Q  213 gtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    |||||||||||||| || |||||||||||||||||||    
T  43368483 gtccctgcaaatatgtttcgttttggttttagtccct 43368519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 5923826 - 5923880
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5923826 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 5923880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 3345402 - 3345348
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3345402 cttaaatatggaaatggtccctgcaaatatctggcgttttggttttagtccctat 3345348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 191 - 249
Target Start/End: Original strand, 29819409 - 29819467
Alignment:
Q  191 aatagacttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29819409 aataggcttaaatatggaaatggtccctgcaaatatctggcgttttggttttagtccct 29819467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 19661732 - 19661678
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  19661732 cttaaatatggaaatggtccttgcaaatatctggcgttttggttttagtccctat 19661678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 5140686 - 5140743
Alignment:
Q  193 tagacttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtcccta 250  Q
    ||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||    
T  5140686 tagacttaaatatggaaatggtccctgcaaatatctgacattttggttttagtcccta 5140743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 8926187 - 8926241
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    ||||||||||||||||||| | ||||||||||| |||||||||||||||||||||    
T  8926187 cttaaatatggaaatggtctccgcaaatatcttacgttttggttttagtccctat 8926241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 8936444 - 8936498
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    ||||||||||||||||||| | ||||||||||| |||||||||||||||||||||    
T  8936444 cttaaatatggaaatggtctccgcaaatatcttacgttttggttttagtccctat 8936498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 30609249 - 30609195
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||| ||||||||||||||||||||| | ||||||||||||||||||||    
T  30609249 cttaaatatgaaaatggtccctgcaaatatctggtgttttggttttagtccctat 30609195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 5404601 - 5404654
Alignment:
Q  198 ttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    ||||||||||||||||||||||||||||||| || ||||| |||||||||||||    
T  5404601 ttaaatatggaaatggtccctgcaaatatctggcattttgattttagtccctat 5404654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 31717175 - 31717229
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||||||||||||||||||||| |  ||||||||||||| |||||||    
T  31717175 cttaaatatggaaatggtccctgcaaatatttgacgttttggttttaatccctat 31717229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 198 - 248
Target Start/End: Complemental strand, 33783780 - 33783730
Alignment:
Q  198 ttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccc 248  Q
    ||||||||||||||| ||||||||||||||| |||||| ||||||||||||    
T  33783780 ttaaatatggaaatgatccctgcaaatatctggcgtttcggttttagtccc 33783730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 28853484 - 28853536
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    ||||||||||||||||||| || ||||||| | ||||||||||||||||||||    
T  28853484 cttaaatatggaaatggtcactacaaatatttggcgttttggttttagtccct 28853536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 3484783 - 3484832
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtc 246  Q
    |||||||||||||||| |||||||||||||||  | ||||||||||||||    
T  3484783 cttaaatatggaaatgatccctgcaaatatctaacattttggttttagtc 3484832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 16525197 - 16525250
Alignment:
Q  198 ttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||||| ||||||||||||||||  ||||||| ||||| |||||||    
T  16525197 ttaaatatggaaatagtccctgcaaatatctgacgttttgcttttaatccctat 16525250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 17238032 - 17238084
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    |||||||||||||||| |||||||||||||||    |||||||||||||||||    
T  17238032 cttaaatatggaaatgatccctgcaaatatctgatattttggttttagtccct 17238084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 18772869 - 18772920
Alignment:
Q  193 tagacttaaatatggaaatggtccctgcaaatatcttgcgttttggttttag 244  Q
    |||||||||||||| ||||| ||| |||||||||| ||| ||||||||||||    
T  18772869 tagacttaaatatgtaaatgatccttgcaaatatcatgcattttggttttag 18772920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 5404953 - 5404899
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||| |||| ||||||||||||||||  | |||||||||||||| ||||    
T  5404953 cttaaatatgaaaatagtccctgcaaatatctgacattttggttttagtctctat 5404899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 5409278 - 5409224
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||| |||| ||||||||||||||||  | |||||||||||||| ||||    
T  5409278 cttaaatatgaaaatagtccctgcaaatatctgacattttggttttagtctctat 5409224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 249
Target Start/End: Original strand, 14655919 - 14655957
Alignment:
Q  211 tggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    |||||||||||||||| || |||||||||||||||||||    
T  14655919 tggtccctgcaaatatatttcgttttggttttagtccct 14655957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 26272363 - 26272309
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||| |||| ||||||| ||||||||  | |||||||||||||||||||    
T  26272363 cttaaatatgaaaatagtccctgtaaatatctgacattttggttttagtccctat 26272309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 1214712 - 1214752
Alignment:
Q  211 tggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||||||| | || |||||||||||||||||||    
T  1214712 tggtccctgcaaatatgtcgcattttggttttagtccctat 1214752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 6564598 - 6564638
Alignment:
Q  211 tggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||||||| |  |||||||||||||||||||||    
T  6564598 tggtccctgcaaatatgtctcgttttggttttagtccctat 6564638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 10091054 - 10091090
Alignment:
Q  213 gtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    |||||||||||||| || |||||||||||||||||||    
T  10091054 gtccctgcaaatatgtttcgttttggttttagtccct 10091090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 10910970 - 10910910
Alignment:
Q  189 ataatagacttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    ||||||| || ||||||||   |||||||||||||||| |  |||||||||||||||||||    
T  10910970 ataataggctaaaatatggttttggtccctgcaaatatgtctcgttttggttttagtccct 10910910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 17238417 - 17238365
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    ||||||| || |||| ||||||||||||||||  | |||||||||||||||||    
T  17238417 cttaaatgtgaaaatagtccctgcaaatatctgacattttggttttagtccct 17238365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 245
Target Start/End: Original strand, 19661350 - 19661398
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagt 245  Q
    |||||||||| |||| ||||||||||||||||  | |||||||||||||    
T  19661350 cttaaatatgaaaatagtccctgcaaatatctgacattttggttttagt 19661398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 14379496 - 14379442
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14379496 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 14379442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 13572472 - 13572526
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  13572472 cttaaatatggaaatggtccctgcaaatatctggcgttttagttttagtccctat 13572526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 197 - 282
Target Start/End: Complemental strand, 18369395 - 18369310
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctatnnnnnnnnnttttggttttagtccctgcaaa 282  Q
    |||||||||||||||| | ||||||||||||| ||||||||||||||||||||||         ||||||||||||||||||||||    
T  18369395 cttaaatatggaaatgatacctgcaaatatctggcgttttggttttagtccctataaaaatattttttggttttagtccctgcaaa 18369310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 29683176 - 29683230
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  29683176 cttaaatatgaaaatggtccctgcaaatatctggcgttttggttttagtccctat 29683230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 191 - 251
Target Start/End: Original strand, 2395151 - 2395211
Alignment:
Q  191 aatagacttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    ||||| ||||||||||||||||||| |||||||||||| |||||||| |||||||||||||    
T  2395151 aataggcttaaatatggaaatggtcactgcaaatatctggcgttttgattttagtccctat 2395211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 25318677 - 25318625
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  25318677 cttaaatatggaaatggtccttgcaaatatctggcgttttggttttagtccct 25318625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 37609338 - 37609286
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  37609338 cttaaatatggaaatggtccttgcaaatatctggcgttttggttttagtccct 37609286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 38873474 - 38873528
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||||||||||||| |||||||||  |||||||||||||||||||||    
T  38873474 cttaaatatggaaatggtccctccaaatatctaacgttttggttttagtccctat 38873528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 7877707 - 7877654
Alignment:
Q  198 ttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    ||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||    
T  7877707 ttaaatatgaaaatggtccctgcaaatatctggcgttttggttctagtccctat 7877654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 41594334 - 41594282
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    ||||||||||||||||||||||||||||||||  | |||||||||||||||||    
T  41594334 cttaaatatggaaatggtccctgcaaatatctgacattttggttttagtccct 41594282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 19204592 - 19204642
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtcc 247  Q
    |||||||||||||||||||||||||||||| | |||||||| |||||||||    
T  19204592 cttaaatatggaaatggtccctgcaaatatttagcgttttgattttagtcc 19204642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 282
Target Start/End: Original strand, 28921194 - 28921279
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctatnnnnnnnnnttttggttttagtccctgcaaa 282  Q
    ||||| ||||||||||||||||||||||||||   |||||||| |||||||||||         ||||||||||||||||||||||    
T  28921194 cttaactatggaaatggtccctgcaaatatctgatgttttggtattagtccctataaaaatattttttggttttagtccctgcaaa 28921279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 186 - 244
Target Start/End: Original strand, 42704978 - 42705036
Alignment:
Q  186 tatataatagacttaaatatggaaatggtccctgcaaatatcttgcgttttggttttag 244  Q
    ||||||| || |||||||||| ||||||||||||||||||||| |||||||| ||||||    
T  42704978 tatataaaaggcttaaatatgaaaatggtccctgcaaatatctggcgttttgcttttag 42705036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 3371302 - 3371354
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    ||||||||||||||||||||  | |||||||| ||||||||||||||||||||    
T  3371302 cttaaatatggaaatggtccaggtaaatatctggcgttttggttttagtccct 3371354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 30432978 - 30432926
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    ||||||||||||||||||||| ||||||||||  | |||||||||||||||||    
T  30432978 cttaaatatggaaatggtcccggcaaatatctgacattttggttttagtccct 30432926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 12806543 - 12806602
Alignment:
Q  192 atagacttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||| |||||||||||||||||||| || |||||| | ||||||||| ||||||||||||    
T  12806543 ataggcttaaatatggaaatggtccttgtaaatatttggcgttttggatttagtccctat 12806602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 17458101 - 17458047
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||| ||||||| ||||||||||||| | ||||| ||||||||||||||    
T  17458101 cttaaatatgaaaatggttcctgcaaatatctagtgttttcgttttagtccctat 17458047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 2395540 - 2395488
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    |||||||||| |||| ||||||||||||||||  | |||||||||||||||||    
T  2395540 cttaaatatgaaaatagtccctgcaaatatctgacattttggttttagtccct 2395488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 18369013 - 18369065
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    |||||||||| |||| ||||||||||||||||  | |||||||||||||||||    
T  18369013 cttaaatatgaaaatagtccctgcaaatatctgacattttggttttagtccct 18369065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 29683557 - 29683505
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    ||||||||||||||| ||||||||||||||||  | ||||| |||||||||||    
T  29683557 cttaaatatggaaatagtccctgcaaatatctgacattttgattttagtccct 29683505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 33940681 - 33940733
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    |||||||||| |||| ||||||||||||||||| | ||||| |||||||||||    
T  33940681 cttaaatatgaaaatagtccctgcaaatatcttacattttgattttagtccct 33940733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 248
Target Start/End: Complemental strand, 12806932 - 12806881
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccc 248  Q
    |||||||||| |||| ||||||||||||||||  | ||||||||||||||||    
T  12806932 cttaaatatgaaaattgtccctgcaaatatctaacattttggttttagtccc 12806881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 249
Target Start/End: Complemental strand, 146674 - 146636
Alignment:
Q  211 tggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    |||||||||||||||| || |||||||||||||||||||    
T  146674 tggtccctgcaaatatgtttcgttttggttttagtccct 146636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 6164281 - 6164227
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||| |||| |||||| ||||||| |||||||| ||||| |||||||    
T  6164281 cttaaatatggatatggcccctgctaatatctggcgttttgattttaatccctat 6164227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 6880356 - 6880306
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtcc 247  Q
    ||||||||||||||| ||||||  |||||||| ||||||||| ||||||||    
T  6880356 cttaaatatggaaatagtccctataaatatctggcgttttggatttagtcc 6880306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 242
Target Start/End: Original strand, 13278064 - 13278110
Alignment:
Q  197 cttaaatatggaaatggt-ccctgcaaatatcttgcgttttggtttt 242  Q
    |||||||||||||||||| ||||||||||||||  ||||||||||||    
T  13278064 cttaaatatggaaatggtcccctgcaaatatctgacgttttggtttt 13278110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 249
Target Start/End: Complemental strand, 30215855 - 30215817
Alignment:
Q  211 tggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  30215855 tggtccctgcaaatatatcgcgttttggttttagtccct 30215817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 42705340 - 42705286
Alignment:
Q  192 atagacttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtc 246  Q
    ||||||||||||||| |||| ||||||||||||||||  | |||||| |||||||    
T  42705340 atagacttaaatatgaaaatagtccctgcaaatatctgacattttggatttagtc 42705286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 30432587 - 30432648
Alignment:
Q  188 tataatagacttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    ||||| || ||||||| || |||| ||||||||||||||||  | |||||||||||||||||    
T  30432587 tataacaggcttaaatgtgaaaatagtccctgcaaatatctgacattttggttttagtccct 30432648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 6880002 - 6880054
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    |||||||||| |||| |||||| |||||||||  | |||||||||||||||||    
T  6880002 cttaaatatgaaaattgtccctacaaatatctgacattttggttttagtccct 6880054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 41693692 - 41693728
Alignment:
Q  213 gtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    |||||||||||||| || |||||||||||||||||||    
T  41693692 gtccctgcaaatatgtttcgttttggttttagtccct 41693728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 42695884 - 42695924
Alignment:
Q  211 tggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||||||| |  |||||||||||||||||||||    
T  42695884 tggtccctgcaaatatgtctcgttttggttttagtccctat 42695924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0817 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0817
Description:

Target: scaffold0817; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 3983 - 4037
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3983 cttaaatatggaaatggtccctgcaaatatctggcgttttggttttagtccctat 4037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0817; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 4365 - 4313
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    |||||||||| |||| ||||||||||||||||  | |||||||||||||||||    
T  4365 cttaaatatgaaaatagtccctgcaaatatctgacattttggttttagtccct 4313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 37118 - 37064
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  37118 cttaaatatggaaatggtccctgcaaatatctagcgttttggttttagtccctat 37064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 36767 - 36819
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    |||||||||| |||| ||||||||||||||||  | |||||||||||||||||    
T  36767 cttaaatatgaaaatagtccctgcaaatatctgacattttggttttagtccct 36819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 31186374 - 31186428
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31186374 cttaaatatggaaatggtccctgcaaatatctggcgttttggttttagtccctat 31186428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 201 - 251
Target Start/End: Complemental strand, 26479673 - 26479623
Alignment:
Q  201 aatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  26479673 aatatggaaatggtccctgcaaatatctggcgttttggttttagtccctat 26479623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 13154239 - 13154291
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  13154239 cttaaatatggaaatggtccctgcaaatatctggtgttttggttttagtccct 13154291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 282
Target Start/End: Original strand, 220513 - 220598
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctatnnnnnnnnnttttggttttagtccctgcaaa 282  Q
    ||||||||||||||||||||||| |||||||| || |||||| ||||||||||||         ||||||||||||||||||||||    
T  220513 cttaaatatggaaatggtccctgtaaatatctggcattttggatttagtccctataaaaatattttttggttttagtccctgcaaa 220598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 282
Target Start/End: Original strand, 689668 - 689753
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctatnnnnnnnnnttttggttttagtccctgcaaa 282  Q
    ||||||||||||||||||||||| |||||||| || |||||| ||||||||||||         ||||||||||||||||||||||    
T  689668 cttaaatatggaaatggtccctgtaaatatctggcattttggatttagtccctataaaaatattttttggttttagtccctgcaaa 689753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 282
Target Start/End: Original strand, 734136 - 734221
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctatnnnnnnnnnttttggttttagtccctgcaaa 282  Q
    ||||||||||||||||||||||| |||||||| || |||||| ||||||||||||         ||||||||||||||||||||||    
T  734136 cttaaatatggaaatggtccctgtaaatatctggcattttggatttagtccctataaaaatattttttggttttagtccctgcaaa 734221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 282
Target Start/End: Original strand, 858032 - 858117
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctatnnnnnnnnnttttggttttagtccctgcaaa 282  Q
    ||||||||||||||||||||||| |||||||| || |||||| ||||||||||||         ||||||||||||||||||||||    
T  858032 cttaaatatggaaatggtccctgtaaatatctggcattttggatttagtccctataaaaatattttttggttttagtccctgcaaa 858117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 3272749 - 3272803
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||    
T  3272749 cttaaatatgtaaatgatccctgcaaatatctggcgttttggttttagtccctat 3272803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 6943657 - 6943711
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    ||||||||||||||||||||| |||||||| | ||||||||||||||||||||||    
T  6943657 cttaaatatggaaatggtccccgcaaatatttggcgttttggttttagtccctat 6943711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 18764668 - 18764614
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||    
T  18764668 cttaaatatgaaaatggtccctgcaaatatctggcgttttggttatagtccctat 18764614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 6891779 - 6891828
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtc 246  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  6891779 cttaaatatggaaatggtccctgcaaatatctggcgtttttgttttagtc 6891828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 197 - 245
Target Start/End: Complemental strand, 31403296 - 31403248
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagt 245  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||    
T  31403296 cttaaatatggaaatggtccctgcaaatatctggtgttttggttttagt 31403248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 31685672 - 31685724
Alignment:
Q  199 taaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||| ||||||||||||||||| |||||||||||||| |||||||    
T  31685672 taaatatggaaaaggtccctgcaaatatctagcgttttggttttaatccctat 31685724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 243
Target Start/End: Original strand, 9180045 - 9180091
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggtttta 243  Q
    |||||||||| ||||||||||||||||||||| |||||||| |||||    
T  9180045 cttaaatatgaaaatggtccctgcaaatatctggcgttttgatttta 9180091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 243
Target Start/End: Complemental strand, 37586403 - 37586353
Alignment:
Q  193 tagacttaaatatggaaatggtccctgcaaatatcttgcgttttggtttta 243  Q
    |||| ||||||||||||||||||| | ||||||||| ||||||||||||||    
T  37586403 tagatttaaatatggaaatggtccttacaaatatctggcgttttggtttta 37586353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 2835120 - 2835173
Alignment:
Q  192 atagacttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagt 245  Q
    |||| ||||||||||||||||||| ||||||||||||   ||||||||||||||    
T  2835120 ataggcttaaatatggaaatggtctctgcaaatatctgatgttttggttttagt 2835173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 249
Target Start/End: Complemental strand, 18549582 - 18549519
Alignment:
Q  186 tatataatagacttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    ||||||||||||| ||||||||   | |||||||||||||| |  |||||||||||||||||||    
T  18549582 tatataatagactaaaatatggttttcgtccctgcaaatatgtctcgttttggttttagtccct 18549519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 18764280 - 18764335
Alignment:
Q  192 atagacttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtcc 247  Q
    |||| |||||||||| |||| ||||||||||||||||  | |||||||||||||||    
T  18764280 ataggcttaaatatgaaaatagtccctgcaaatatctgacattttggttttagtcc 18764335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 198 - 249
Target Start/End: Complemental strand, 31186726 - 31186675
Alignment:
Q  198 ttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    ||||||||| |||| ||||||||||||||||  | |||||||||||||||||    
T  31186726 ttaaatatgaaaatagtccctgcaaatatctgacattttggttttagtccct 31186675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 3273103 - 3273049
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    ||||||| || |||| ||||||||||||||||  | |||||||||||||||||||    
T  3273103 cttaaatgtgaaaatagtccctgcaaatatctgacattttggttttagtccctat 3273049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 245
Target Start/End: Original strand, 13405442 - 13405496
Alignment:
Q  191 aatagacttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagt 245  Q
    ||||| |||||||||| ||||||||||||||||||||| |  ||||| |||||||    
T  13405442 aataggcttaaatatgcaaatggtccctgcaaatatctggtattttgattttagt 13405496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 226
Target Start/End: Original strand, 20112426 - 20112455
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatat 226  Q
    ||||||||||||||||||||||||||||||    
T  20112426 cttaaatatggaaatggtccctgcaaatat 20112455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 245
Target Start/End: Complemental strand, 6944040 - 6943992
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagt 245  Q
    |||||||||| |||| ||||||||||||||||  | |||||||||||||    
T  6944040 cttaaatatgaaaatagtccctgcaaatatctgacattttggttttagt 6943992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 32040093 - 32040129
Alignment:
Q  213 gtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    |||||||||||||| || |||||||||||||||||||    
T  32040093 gtccctgcaaatatgtttcgttttggttttagtccct 32040129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 20062181 - 20062127
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  20062181 cttaaatatggaaatggtccctgcaaatatctggcgttttggttttagtccctat 20062127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 28031641 - 28031697
Alignment:
Q  191 aatagacttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtcc 247  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  28031641 aataggcttaaatatggaaatggtccctgcaaatatctggcgttttagttttagtcc 28031697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 18963609 - 18963663
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    ||||||| |||||||||||||||||||||||  ||||||||||||||||||||||    
T  18963609 cttaaatgtggaaatggtccctgcaaatatccggcgttttggttttagtccctat 18963663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 33619279 - 33619225
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||| |||||    
T  33619279 cttaaatatggaaatggtccctgcaaatatctggtgttttggttttagttcctat 33619225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 50616939 - 50616989
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtcc 247  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  50616939 cttaaatatggaaatggtccctgcaaatatctggcgtattggttttagtcc 50616989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 50624766 - 50624816
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtcc 247  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  50624766 cttaaatatggaaatggtccctgcaaatatctggcgtattggttttagtcc 50624816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 26244549 - 26244601
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    ||||||||||||||||||||||||||||||||  | |||||||||||||||||    
T  26244549 cttaaatatggaaatggtccctgcaaatatctgacattttggttttagtccct 26244601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 14602010 - 14602060
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtcc 247  Q
    |||||||||||||||||||||||||||||||| ||  ||||||||||||||    
T  14602010 cttaaatatggaaatggtccctgcaaatatctggcactttggttttagtcc 14602060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 50096133 - 50096185
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    ||||||||||||||| ||||||||||||||||  | |||||||||||||||||    
T  50096133 cttaaatatggaaattgtccctgcaaatatctgacattttggttttagtccct 50096185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 33557 - 33611
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||| | ||| |||||||||||||||  |||||||||||||||||||||    
T  33557 cttaaatatgaacatgatccctgcaaatatctgacgttttggttttagtccctat 33611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 10913775 - 10913828
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||||||||||| ||||||||| ||| |||||||||||| |||||||    
T  10913775 cttaaatatggaaatggtccatgcaaatat-ttgggttttggttttaatccctat 10913828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 12322092 - 12322146
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||| |||||||| ||| ||||||||  |||||||||||||||||||||    
T  12322092 cttaaatatgaaaatggtctctgtaaatatctgacgttttggttttagtccctat 12322146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 37172631 - 37172577
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||| |||||||| | |||||||| |||||||| |||||||||||||    
T  37172631 cttaaatatggacatggtcccggtaaatatctggcgttttgattttagtccctat 37172577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 50625152 - 50625095
Alignment:
Q  192 atagacttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    |||| |||||||||| |||| ||||||||||||||||  | |||||||||||||||||    
T  50625152 ataggcttaaatatgaaaatagtccctgcaaatatctgacattttggttttagtccct 50625095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 251
Target Start/End: Complemental strand, 14602397 - 14602337
Alignment:
Q  191 aatagacttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    ||||| |||||||||| |||| ||||||||||||||||  | ||||||||||| |||||||    
T  14602397 aataggcttaaatatgaaaatagtccctgcaaatatctgacattttggttttaatccctat 14602337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 20061798 - 20061850
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    |||||||||| |||| ||||||||||||||||  | |||||||||||||||||    
T  20061798 cttaaatatgaaaatagtccctgcaaatatctgacattttggttttagtccct 20061850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 28032030 - 28031978
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    |||||||||| |||| ||||||||||||||||  | |||||||||||||||||    
T  28032030 cttaaatatgaaaatagtccctgcaaatatctgacattttggttttagtccct 28031978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 249
Target Start/End: Original strand, 10887249 - 10887287
Alignment:
Q  211 tggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    |||||||||||||||| || |||||||||||||||||||    
T  10887249 tggtccctgcaaatatgtttcgttttggttttagtccct 10887287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 226
Target Start/End: Complemental strand, 39027728 - 39027699
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatat 226  Q
    ||||||||||||||||||||||||||||||    
T  39027728 cttaaatatggaaatggtccctgcaaatat 39027699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 249
Target Start/End: Original strand, 4789306 - 4789362
Alignment:
Q  193 tagacttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    |||||| ||||||||   |||||||||||||||| |  |||||||||||||||||||    
T  4789306 tagactaaaatatggttttggtccctgcaaatatgtctcgttttggttttagtccct 4789362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 37172248 - 37172300
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    |||||||||| |||| ||| ||||||||||||  | |||||||||||||||||    
T  37172248 cttaaatatgaaaatagtctctgcaaatatctgtcattttggttttagtccct 37172300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 39747841 - 39747781
Alignment:
Q  189 ataatagacttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    ||||||| || ||||||||   |||||||||||||||| |  |||||||||||||||||||    
T  39747841 ataataggctaaaatatggttttggtccctgcaaatatgtctcgttttggttttagtccct 39747781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 42154780 - 42154831
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    |||||||||||||||||||   | |||||||| ||||||||||||||||||||    
T  42154780 cttaaatatggaaatggtcttcgtaaatatct-gcgttttggttttagtccct 42154831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 198 - 249
Target Start/End: Complemental strand, 18786362 - 18786311
Alignment:
Q  198 ttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  18786362 ttaaatatggaaatggtccctgcaaatatctggcgttttggttttagtccct 18786311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 10461728 - 10461674
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  10461728 cttaaatatggaaatggtccctgcaaatatctggcgttttgattttagtccctat 10461674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 14868677 - 14868731
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||    
T  14868677 cttaaatatggaaacggtccctccaaatatctggcgttttggttttagtccctat 14868731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 40589635 - 40589581
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||| |||||||    
T  40589635 cttaaatatggaaatggtccctgcaaatatctggcgttttgcttttaatccctat 40589581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 43197284 - 43197230
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||||||||||||||||||||||| | ||||| ||||||||||||||    
T  43197284 cttaaatatggaaatggtccctgcaaatatctggtgtttttgttttagtccctat 43197230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 6542641 - 6542587
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    ||||||||||||||||||||||| |||||||| || |||||| ||||||||||||    
T  6542641 cttaaatatggaaatggtccctgtaaatatctggcattttggatttagtccctat 6542587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 15969430 - 15969484
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||||||||||| | ||||||| | ||||||||||||||||||||||    
T  15969430 cttaaatatggaaatggtccttacaaatatttggcgttttggttttagtccctat 15969484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 40589032 - 40588978
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||||||||||||||||||||||| | |||||| ||||| |||||||    
T  40589032 cttaaatatggaaatggtccctgcaaatatctggagttttgcttttaatccctat 40588978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 5933508 - 5933454
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||| |||||||||||| |||||||| ||||||||| |||||| |||||    
T  5933508 cttaaatatgaaaatggtccctgtaaatatctagcgttttggatttagttcctat 5933454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 249
Target Start/End: Complemental strand, 6497581 - 6497523
Alignment:
Q  191 aatagacttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    ||||| |||||||||| |||| ||||||||||||||||  | |||||||||||||||||    
T  6497581 aataggcttaaatatgaaaattgtccctgcaaatatctgacattttggttttagtccct 6497523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 243
Target Start/End: Original strand, 41137141 - 41137187
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggtttta 243  Q
    |||||||||||||||| || |||||||||||| ||||||||||||||    
T  41137141 cttaaatatggaaatgatcactgcaaatatctggcgttttggtttta 41137187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 3598413 - 3598465
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    |||||||||| |||||||||||||||||||||  | |||||| ||||||||||    
T  3598413 cttaaatatgaaaatggtccctgcaaatatctgacattttggatttagtccct 3598465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 22394124 - 22394176
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    |||||||||| |||| ||||||||||||||||  | |||||||||||||||||    
T  22394124 cttaaatatgaaaattgtccctgcaaatatctgacattttggttttagtccct 22394176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 24491226 - 24491174
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    ||||||||||||||||||||||||||  ||||  | |||||||||||||||||    
T  24491226 cttaaatatggaaatggtccctgcaataatctgacattttggttttagtccct 24491174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 249
Target Start/End: Complemental strand, 4736526 - 4736488
Alignment:
Q  211 tggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    |||||||||||||||| || |||||||||||||||||||    
T  4736526 tggtccctgcaaatatgtttcgttttggttttagtccct 4736488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 282
Target Start/End: Original strand, 24490844 - 24490929
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctatnnnnnnnnnttttggttttagtccctgcaaa 282  Q
    ||||||| || |||| ||||||||||||||||  | ||||||||||||||||| |         ||||||||||||||||||||||    
T  24490844 cttaaatgtgaaaatagtccctgcaaatatctgacattttggttttagtccctgtaaaaatattttttggttttagtccctgcaaa 24490929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 249
Target Start/End: Original strand, 28871653 - 28871691
Alignment:
Q  211 tggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  28871653 tggtccctgcaaatatccttcgttttggttttagtccct 28871691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 4122959 - 4122906
Alignment:
Q  198 ttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    ||||||||||||||| |||  | |||||||| |||||||| |||||||||||||    
T  4122959 ttaaatatggaaatgttcctcgtaaatatctggcgttttgcttttagtccctat 4122906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 18785983 - 18786035
Alignment:
Q  198 ttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    ||||||| ||||||||| ||||||||||| | || |||||||||||||||||||    
T  18785983 ttaaataaggaaatggttcctgcaaatat-tggcattttggttttagtccctat 18786035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 5933125 - 5933177
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    |||||||||| |||| |||||||||||||| |  | |||||||||||||||||    
T  5933125 cttaaatatgaaaattgtccctgcaaatatgtgacattttggttttagtccct 5933177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 14869054 - 14869006
Alignment:
Q  198 ttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtc 246  Q
    ||||||||| |||| ||||||||||||||||  | ||||||||||||||    
T  14869054 ttaaatatgaaaatagtccctgcaaatatctgacattttggttttagtc 14869006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 38496764 - 38496728
Alignment:
Q  213 gtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    |||||||||||||| || |||||||||||||||||||    
T  38496764 gtccctgcaaatatgtttcgttttggttttagtccct 38496728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 24741 - 24687
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  24741 cttaaatacggaaatggtccccgcaaatatcttgcgttttggttttagtccctat 24687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 189 - 251
Target Start/End: Original strand, 19476385 - 19476447
Alignment:
Q  189 ataatagacttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    ||||||| |||||||||||||||||||||||| ||||| | ||||||||||||||||||||||    
T  19476385 ataataggcttaaatatggaaatggtccctgccaatatttggcgttttggttttagtccctat 19476447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 44219677 - 44219623
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  44219677 cttaaatatggaaatagtccctgcaaatatcttgcgttttggttttattccctat 44219623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 40729092 - 40729144
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  40729092 cttaaatatggaaatggtccctgcaaatatctggcgtttttgttttagtccct 40729144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 19157695 - 19157745
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtcc 247  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  19157695 cttaaatatggaaatggtccctgcaaatatctggcgtattggttttagtcc 19157745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 20757094 - 20757144
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtcc 247  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  20757094 cttaaatatggaaatggtccctgcaaatatctggcgtattggttttagtcc 20757144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 42516867 - 42516921
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||| |||||    
T  42516867 cttaaatatggaaatggtccctgcaaatatctggcattttggttttagttcctat 42516921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 251
Target Start/End: Original strand, 44483233 - 44483283
Alignment:
Q  201 aatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  44483233 aatatggaaatggtccctgcaaatatctgacgttttggttttagtccctat 44483283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 35026445 - 35026497
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    ||||||||||||||||||||||||||| ||||  |||||||||||||||||||    
T  35026445 cttaaatatggaaatggtccctgcaaacatctgacgttttggttttagtccct 35026497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 34595702 - 34595648
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||| |||||||||||| ||||||||  |||||||||||||||||||||    
T  34595702 cttaaatatgaaaatggtccctgtaaatatctgacgttttggttttagtccctat 34595648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 22365034 - 22364985
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtc 246  Q
    |||||||||||||||||| | |||||||||||||| ||||||||||||||    
T  22365034 cttaaatatggaaatggttcttgcaaatatcttgcattttggttttagtc 22364985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 13426675 - 13426623
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    ||||||||||| ||||||||||||||||||||  |||||| ||||||||||||    
T  13426675 cttaaatatgggaatggtccctgcaaatatctgacgttttagttttagtccct 13426623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 44219289 - 44219343
Alignment:
Q  192 atagacttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtc 246  Q
    ||||||||||||||| |||| ||||||||||||||||  | ||||||||||||||    
T  44219289 atagacttaaatatgaaaatagtccctgcaaatatctgacattttggttttagtc 44219343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 19158076 - 19158024
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    |||||||||| |||| ||||||||||||||||  | |||||||||||||||||    
T  19158076 cttaaatatgaaaatagtccctgcaaatatctgacattttggttttagtccct 19158024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 20757475 - 20757423
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    |||||||||| |||| ||||||||||||||||  | |||||||||||||||||    
T  20757475 cttaaatatgaaaatagtccctgcaaatatctgacattttggttttagtccct 20757423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 244
Target Start/End: Original strand, 34487142 - 34487189
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttag 244  Q
    |||||||||| ||||||| |||||||||||||  ||||||||||||||    
T  34487142 cttaaatatgaaaatggttcctgcaaatatctgccgttttggttttag 34487189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 24356 - 24408
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    |||||||||| |||| ||||| ||||||||||  | |||||||||||||||||    
T  24356 cttaaatatgaaaatagtcccggcaaatatctgacattttggttttagtccct 24408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 1974027 - 1974063
Alignment:
Q  213 gtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    |||||||||||||| || |||||||||||||||||||    
T  1974027 gtccctgcaaatatgtttcgttttggttttagtccct 1974063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 22364657 - 22364709
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    ||||||| || |||| ||||||||||||||||  | |||||||||||||||||    
T  22364657 cttaaatgtgaaaatagtccctgcaaatatctgacattttggttttagtccct 22364709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 46304366 - 46304330
Alignment:
Q  213 gtccctgcaaatatcttgcgttttggttttagtccct 249  Q
    |||||||||||||| || |||||||||||||||||||    
T  46304366 gtccctgcaaatatgtttcgttttggttttagtccct 46304330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 4770 - 4716
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||||||||||||||||||||| |  |||||||||||||||||||||    
T  4770 cttaaatatggaaatggtccctgcaaatatttgacgttttggttttagtccctat 4716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 73933 - 73987
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||||||||||||||||||||||  |||||||||||||| |||||||    
T  73933 cttaaatatggaaatggtccctgcaaatatccggcgttttggttttattccctat 73987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 118026 - 118080
Alignment:
Q  194 agacttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccc 248  Q
    |||||||||||||||||||||||||| |||||||| ||||||||| |||||||||    
T  118026 agacttaaatatggaaatggtccctgtaaatatctggcgttttggatttagtccc 118080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 43661 - 43607
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||||||||||| | ||||||||||| |||||||||||||||| |||||    
T  43661 cttaaatatggaaatggttcttgcaaatatctggcgttttggttttagttcctat 43607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 43910 - 43960
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtcc 247  Q
    ||||||||||||||| ||||| ||||||||||  |||||||||||||||||    
T  43910 cttaaatatggaaatagtcccggcaaatatctgtcgttttggttttagtcc 43960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 212795 - 212741
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    ||||||||||||||||||||| | ||||||||   ||||||||||||||||||||    
T  212795 cttaaatatggaaatggtccccgtaaatatctgatgttttggttttagtccctat 212741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 36376 - 36322
Alignment:
Q  197 cttaaatatggaaatggtccctgcaaatatcttgcgttttggttttagtccctat 251  Q
    |||||||||  |||| ||||||||||||||||  |||||| ||||||||||||||    
T  36376 cttaaatataaaaatagtccctgcaaatatctgacgttttagttttagtccctat 36322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University