View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19210_high_1 (Length: 912)
Name: NF19210_high_1
Description: NF19210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19210_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 848; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 848; E-Value: 0
Query Start/End: Original strand, 11 - 897
Target Start/End: Complemental strand, 36515847 - 36514960
Alignment:
| Q |
11 |
catcatcatcttgtgagctaactttagtgagattcaaattcatttaacatagtaattgagcagtgtaaaatatgataatgtgagaatttaacccaagttt |
110 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36515847 |
catcctcatcttgtgagctaactttagtgagattcaaattcatttaacatagtaattgagcagtgtaaaatatgataatgtgagaatttaacccaagttt |
36515748 |
T |
|
| Q |
111 |
cacgtgagtattaaaaatagtttcttagcatggaatgcgcccatttaacatttgtgttctcacattcacaccttcatcttctgagctaatttttgagatg |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36515747 |
cacgtgagtattaaaaatagtttcttagcatggaatgcgcccatttaacatttgtgttctcacattcacaccttcatcttctgagctaatttttgagatg |
36515648 |
T |
|
| Q |
211 |
aaattggagcctatttaatatgctatcataccca-attaagaatttcatatattaaaggtgagggttgatattgatgttgtggaaattggatgtacatat |
309 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36515647 |
aaattggagcctatttaatatgctatcatacccagattaagaatttcatatattaaaggtgagggttgatattgatgttgtggaaattggatgtacatat |
36515548 |
T |
|
| Q |
310 |
gtggttgagatcaaaccgtatttaagagttttaacctcttacannnnnnnngaaggaagttttaacctcttacatgtcatgctatattttttcattcttt |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36515547 |
gtggttgagatcaaaccgtatttaagagttttaacctcttacattttttttgaaggaagttttaacctcttacatgtcatgctatattttttcattcttt |
36515448 |
T |
|
| Q |
410 |
tgaattgtttttacataatgatgatataggagttaccaattaatggagaagctatttaaaatcttcgtgtatgaagagggagaacctcctctttttcatt |
509 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36515447 |
tgaattgtttttacataatgatgatataggagttaccaattaatggagaagctatttaaaatcttcgtgtatgaagagggagaacctcctctttttcatt |
36515348 |
T |
|
| Q |
510 |
atggtccttgcaaaaatatatattcaatggagggaatatttatcaacttattggaaaacaatactttgtttcggactcagaatccaaatgaagctcatgt |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36515347 |
atggtccttgcaaaaatatatattcaatggagggaatatttatcaacttattggaaaacaatactttgtttcggactcagaatccaaatgaagctcatgt |
36515248 |
T |
|
| Q |
610 |
ctactttcttccatttagtgttgttatgatccttgagcatctctttcacccagttattcgtgacaaagctgttttgggaagaactattggtgattatgtt |
709 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36515247 |
ctactttcttccatttagtgttgttatgatccttgagcatctctttcacccagttattcgtgacaaagctgttttgggaagaactattggtgattatgtt |
36515148 |
T |
|
| Q |
710 |
catatcatatcacacaaatatgcttattggaatagaagttatggagctgaccatttcatgctttcttgtcatgattgggtacttccttgaccatttttgt |
809 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36515147 |
catatcatatcacacaaatatgcttattggaatagaagttatggagctgaccatttcatgctttcttgtcatgattgggtacttccttgaccatttttgt |
36515048 |
T |
|
| Q |
810 |
gtccagtgtttgtgtccgtatctgtgcttcatagttgactaatatttttatttttcatgaaaaatgattttgtgcatagggaccaagg |
897 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36515047 |
gtccagtgtctgtgtccgtatctgtgcttcatagttgactaatatttttatttttcatgaaaaatgattttgtgcatagggaccaagg |
36514960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 306 - 897
Target Start/End: Original strand, 36805675 - 36806267
Alignment:
| Q |
306 |
atatgtggttgagatcaaaccgtatttaagagttttaacctcttacannnnnnnngaaggaagttttaacctcttacatgtcatgctatattttttcatt |
405 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36805675 |
atatgtggttgagatcaaaccatatttaagagttttaatctcttacattttttttgaaggaagttttaacctcttacatgtcatgttatattttttcatt |
36805774 |
T |
|
| Q |
406 |
cttttgaattgtttttacataatgatgatataggagttaccaattaatggagaagctatttaaaatcttcgtgtatgaagagggagaacctcctcttttt |
505 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36805775 |
cttttgaattttttttacataatgatgatataggagttaccacttaatggagaagctatttaaaatctttgtgtatgaagagggagaacctcctcttttt |
36805874 |
T |
|
| Q |
506 |
cattatggtccttgcaaaaatatatattcaatggagggaatatttatcaacttattggaaaacaatactttgtttcggactcagaatccaaatgaagctc |
605 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36805875 |
cactatggtccttgcaaaaatatatattcaatggagggaatatttatcaacttattggaaaacaatactttgtttcggactcgtaatccaaatgaagctc |
36805974 |
T |
|
| Q |
606 |
atgtctactttcttccatttagtgttgttatgatccttgagcatctctttcacccagttattcgtgacaaagctgttttgggaagaactattggtgatta |
705 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36805975 |
atgcctactttcttccatttagtgttgttatgatccttgaacatctctttcacccagttattcgtgacaaagctgttttgggaagaactattggtgatta |
36806074 |
T |
|
| Q |
706 |
tgttcatatcatatcacacaaatatgcttattggaatagaagttatggagctgaccatttcatgctttcttgtcatgattgggtacttccttgaccattt |
805 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36806075 |
tgttcatatcatatcacacaaatatgcatattggaatagaagttatggagctgatcatttcatgctttcttgtcatgattgggtactttcttgaccattt |
36806174 |
T |
|
| Q |
806 |
ttgtgtccagtgtttgtgtccgtatctgtgcttcatagttgactaa-tatttttatttttcatgaaaaatgattttgtgcatagggaccaagg |
897 |
Q |
| |
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|||||| |||| |||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36806175 |
ctgtgtctggtgtctgtgtccgtatctgtgcttcataggtgactaattttttttatttttcatgaaaaatgattttgtggatagggaccaagg |
36806267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 11 - 183
Target Start/End: Original strand, 36805408 - 36805593
Alignment:
| Q |
11 |
catcatcatcttgtgagctaactttagtgagattcaaattcatttaacatagtaattgagcagtgtaaaatatgataatgtgagaatttaacccaagttt |
110 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | | | ||||| |||||||||||||||||||||| ||||||| |
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| T |
36805408 |
catcatcatcttgtgagctaactttaatgagattcaaattcatttaacatagtaatttaacggcgtaaagtatgataatgtgagaatttaactcaagttt |
36805507 |
T |
|
| Q |
111 |
cac-------------gtgagtattaaaaatagtttcttagcatggaatgcgcccatttaacatttgtgttctcacattcacacct |
183 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36805508 |
cacgtgagacatgaaagtgagtattaaaaatagtttcttagcatggaatgcgcccatttaacatttgtgttctcacattcacacct |
36805593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 36805625 - 36805679
Alignment:
| Q |
178 |
acaccttcatcttctgagctaatttttgagatgaaattggagcctatttaatatg |
232 |
Q |
| |
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||||||||||||| |||||||| ||||| |||||||||| ||| ||||||||||| |
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|
| T |
36805625 |
acaccttcatcttttgagctaaattttgggatgaaattgaagcttatttaatatg |
36805679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 751 - 790
Target Start/End: Original strand, 41756718 - 41756757
Alignment:
| Q |
751 |
tggagctgaccatttcatgctttcttgtcatgattgggta |
790 |
Q |
| |
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||||||||| ||||||||||||||||| |||||||||||| |
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| T |
41756718 |
tggagctgatcatttcatgctttcttgccatgattgggta |
41756757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 725 - 790
Target Start/End: Original strand, 41764634 - 41764699
Alignment:
| Q |
725 |
aaatatgcttattggaatagaagttatggagctgaccatttcatgctttcttgtcatgattgggta |
790 |
Q |
| |
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|||||| | |||||||| ||||| |||||||||| |||||||| ||| |||| |||||||||||| |
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| T |
41764634 |
aaatatccctattggaaccgaagtcatggagctgatcatttcatacttgcttgccatgattgggta |
41764699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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