View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19210_high_12 (Length: 425)
Name: NF19210_high_12
Description: NF19210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19210_high_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 10 - 408
Target Start/End: Original strand, 53820459 - 53820857
Alignment:
| Q |
10 |
agatgaataaacaggaacatgcaattgttgttgttgtgtgacattcagattcacacaacggattccagaaactagtttctcaatttccttactcaacttc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53820459 |
agatgaataaacaggaacatgcaattgttgttgttgtgtgacattcagattcacacaacggattccagaaactagtttctcaatttccttactcaacttc |
53820558 |
T |
|
| Q |
110 |
ttcttagcttttaaatatataactaactttgattcatctcgctttcttatagcaatttgaactgaggaatgttcttctttaaggtataaaatcgatgttt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53820559 |
ttcttagcttttaaatatataactaactttgattcatctcgctttcttatagcaatttgaactgaggaatgttcttctttaaggtataaaatcgatgttt |
53820658 |
T |
|
| Q |
210 |
ggaacattccataagcatcgacgaagcgaagagaatattctagaaggttctccacccattgaggatggtaacggagtgattcttgggtttgtggaagttg |
309 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53820659 |
ggaacattccataagcgtcgacgaagcgaagagaatattctagaaggttctccacccattgaggatggtaacggagtgattcttgggtttgtggaagttg |
53820758 |
T |
|
| Q |
310 |
gagaatgtcttgaaaagtttcgtatgtttgtttgagaagagttaaaccgttggagaggtttttggacgttagtggttgagattttgaagtggaattagt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53820759 |
gagaatgtcttgaaaagtttcgtatgtttgttggagaagagttaaaccgttggagaggtttttggacgttagtggttgagattttgaagtggaattagt |
53820857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University