View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19210_high_13 (Length: 412)
Name: NF19210_high_13
Description: NF19210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19210_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 19 - 404
Target Start/End: Original strand, 39999145 - 39999530
Alignment:
| Q |
19 |
catgcatgctattgaggtctagcgcaaataattggtacacatggtgtatgagtgttgtaaaactcggatagcaaatttgattcttactgataaaaaagtt |
118 |
Q |
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| T |
39999145 |
catgcatgctattgaggtctagcgcaaataattggtacacatggtgtatgagtgttgtaaaactcggatagcaaatttgattcttactgataaaaaagtt |
39999244 |
T |
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| Q |
119 |
taggacataatttgaaactaacctttcccataaaatttaaatgaagtaatgccattgctatttgactatatggaaatatgatactataaaaggatgggat |
218 |
Q |
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| T |
39999245 |
taggacataatttgaaactaatctttcccataaaatttaaatgaagtaatgccattgctatttgactatatggaaatatgatactataaaaggatgggat |
39999344 |
T |
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| Q |
219 |
gtccttctagttcagcattcattctcccctttgaatacgaacagattttcactagtgccttgcatggttcttttaagtttcgttgtgacttgtcaaggag |
318 |
Q |
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| T |
39999345 |
gtccttctagttcagcattcattctcccctttgaatacgaacagattttcactagtgccttgcatggtacttttaagtttcgttgtgatttgtcaaggag |
39999444 |
T |
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| Q |
319 |
gcatcctgaggaagaacttctaccagcattcctgccctcgggccaatgacattattatggaaaaaaccctacagcatgtctctgct |
404 |
Q |
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| T |
39999445 |
gcatcctggggaagaacttctaccagcattcctgccctcaggccaatgacattattatggaaaaaaccctacagtatgtctctgct |
39999530 |
T |
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