View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19210_high_14 (Length: 411)
Name: NF19210_high_14
Description: NF19210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19210_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 18 - 399
Target Start/End: Original strand, 42422078 - 42422459
Alignment:
| Q |
18 |
tatgcaacttacaagaatcaacaaataactagtgattcatttgtgccacctttttaccaaggaacacaagagagtaattttttatcatcttctttgattg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42422078 |
tatgcaacttacaagaatcaacaaataactagtgattcatttgtgccacctttttaccaaggaacacaagagagtaattttttatcatcttctttgattg |
42422177 |
T |
|
| Q |
118 |
gaaatggtttacctgttgctccttccattagttatgaattgagtcgtgatcaagtttctggaagattgggtttgagtcttaaagctaatggaaaacttcg |
217 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42422178 |
gaaatggtttacctgttgctccttccattggttatgaattgagtcgtgatcaagtttctggaagattgggcttgagtcttaaagctaatggaaaacttcg |
42422277 |
T |
|
| Q |
218 |
ttggaaaattggtacttgggtttctggtcgttacaggtttaatgttaattgtgattctatcgtggcttttggaattggacccactttgaatgtgcctcct |
317 |
Q |
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| T |
42422278 |
ttggaaaattggtacttgggtttctggtcgttacaggtttaatgttaattgtgattctatcgtggcttttggaattggacccactttgaatgtgcctcct |
42422377 |
T |
|
| Q |
318 |
ctaaattcaaaactgggtgctttgtgttctaccacaatttaaacatagattaagcatgataatattgctaagtactcttcat |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42422378 |
ctaaattcaaaactgggtgctttgtgttctaccacaatttaaacatagattaagcatgataatattgctaagtactcttcat |
42422459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 121 - 399
Target Start/End: Complemental strand, 2237486 - 2237209
Alignment:
| Q |
121 |
atggtttacctgttgctccttccattagttatgaattgagtcgtgatcaagtttctggaagattgggtttgagtcttaaagctaatggaaaacttcgttg |
220 |
Q |
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| T |
2237486 |
atggtttacctgttgttccttccatttgttgtgaattgagtcgtgatcaagtatctggaagattgtgtttgagtcttaaagccaatggaaaacttcgttg |
2237387 |
T |
|
| Q |
221 |
gaaaattggtacttgggtttctggtcgttacaggtttaatgttaattgtgattctatcgtggcttttggaattggacccactttgaatgtgcctcctcta |
320 |
Q |
| |
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|||||||||||||| |||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
2237386 |
aaaaattggtacttga-tttctgatcgttacatgtttaatgttaattgtgattctatagtggcttttggaattggacccactctgaatgtgcctcctctg |
2237288 |
T |
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| Q |
321 |
aattcaaaactgggtgctttgtgttctaccacaatttaaacatagattaagcatgataatattgctaagtactcttcat |
399 |
Q |
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| T |
2237287 |
aattcaaaacagggtgctttgtgttctaccacaatttaaacatagattaagcatgataatattgctaagtactcttcat |
2237209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 121 - 398
Target Start/End: Complemental strand, 34807340 - 34807064
Alignment:
| Q |
121 |
atggtttacctgttgctccttccattagttatgaattgagtcgtgatcaagtttctggaagattgggtttgagtcttaaagctaatggaaaacttcgttg |
220 |
Q |
| |
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||||||||||||||| |||||||||| ||| ||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
34807340 |
atggtttacctgttgttccttccatttgttgtgaattgagtcatgatcaagtatctggaagattgtgtttgagtcttaaagctaatggaaaacttcgttg |
34807241 |
T |
|
| Q |
221 |
gaaaattggtacttgggtttctggtcgttacaggtttaatgttaattgtgattctatcgtggcttttggaattggacccactttgaatgtgcctcctcta |
320 |
Q |
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|||||||||||||| |||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34807240 |
aaaaattggtacttga-tttctgattgttacaggtttaatgttaattgtgattctatagtggcttttggaattggacccactttgaatgtgcctcctctg |
34807142 |
T |
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| Q |
321 |
aattcaaaactgggtgctttgtgttctaccacaatttaaacatagattaagcatgataatattgctaagtactcttca |
398 |
Q |
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|||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34807141 |
aattcaaaacaaggtgctttgtgttctaacacaatttaaacatagattaagcatggtaatattgctaagtactcttca |
34807064 |
T |
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