View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19210_high_16 (Length: 386)
Name: NF19210_high_16
Description: NF19210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19210_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 55372381 - 55372020
Alignment:
| Q |
1 |
tacgtacatgttataagttttttcaagtagtctcactaatatttataacaatagataaactcaaatatagcaatcaaaacatgttctataagtaagagga |
100 |
Q |
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| T |
55372381 |
tacgtacatgttataagttttttcaagtagtctcactaatatttataacaatagataaactcaaatatagcaatcaaaacatggcttatgagtaagaaga |
55372282 |
T |
|
| Q |
101 |
ggccccataattgtatgtatgtggttggtttgcatttagaaaagcctgttctcattgctttgaaccccacatgttactggtgctttagctttcattttct |
200 |
Q |
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| T |
55372281 |
ggccccataattgtatgtatgtggttggtttgcatttagaaaagcctgttctcattgctttgaaccccacatgttactggtgctttagctttcattttct |
55372182 |
T |
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| Q |
201 |
ttaagtaccaaatgccacctccaattccaagtgctccaaaagctgaaatagcggtaactgtccctgcagccagaattccaaatccaacacacaaaacaaa |
300 |
Q |
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| T |
55372181 |
ttaagtaccaaatgccacctccaattccaagtgctccaaaagctgaaatagcagtaactgtccctgcagccagaattccaaatccaacacacaaaacaaa |
55372082 |
T |
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| Q |
301 |
accacaaacataagcctaattttcaacttcaaaaaccctggctttgtgaatattaattacta |
362 |
Q |
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| T |
55372081 |
accacaaacataagcctaattttcaacttcaaaaaccctggctttgtgaatattaattacta |
55372020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 230
Target Start/End: Complemental strand, 8516217 - 8516122
Alignment:
| Q |
135 |
tttagaaaagcctgttctcattgctttgaaccccacatgttactggtgctttagctttcattttctttaagtaccaaatgccacctccaattccaa |
230 |
Q |
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| T |
8516217 |
tttagaatagtctattatcattggtttgaactccacatgtgactggtgcagtagctctcaatttcttcaagtaccaaataccagctccaattccaa |
8516122 |
T |
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