View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19210_high_18 (Length: 376)
Name: NF19210_high_18
Description: NF19210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19210_high_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 16 - 212
Target Start/End: Complemental strand, 28488473 - 28488277
Alignment:
| Q |
16 |
atccatcactctcaaaggataatactcttagtggcatcgtttaaggaacaatatatgaacctcttccgtagattaatatatttttcatttagcacaaatg |
115 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28488473 |
atccaccactctcaaaggataatactcttagtggcaacatttaaggaacgatatatgaacctcttccgtagattaatatatttttcatttagcacaaatg |
28488374 |
T |
|
| Q |
116 |
tgcatctatctttttccacatgtttctttgatttacaattttaggcttgttacatgcaaacctgtcaactaaagaacctctaataatttaacttata |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28488373 |
tgcatctatctttttccacatgtttctttgatttacaattttaggcttgttacatgcaaacctgtcaactaaagaacctctaataatttaacttata |
28488277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 306 - 358
Target Start/End: Complemental strand, 28487565 - 28487513
Alignment:
| Q |
306 |
tggagcgtttggtaagtgtcaaacatggccctttcaaaggactaggtttttgc |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28487565 |
tggagcgtttggtaagtgtcaaacatggccctttcgaaggactaggtttttgc |
28487513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 288
Target Start/End: Complemental strand, 43102784 - 43102741
Alignment:
| Q |
245 |
aacaaggatagaaaatggattcacaagattcattgagaaatcaa |
288 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
43102784 |
aacaaggattgaaggtggattcacaagattcattgagaaatcaa |
43102741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 22 - 127
Target Start/End: Original strand, 15966729 - 15966834
Alignment:
| Q |
22 |
cactctcaaaggataatactcttagtggcatcgtttaaggaacaatatatgaacctcttccgtagattaatatatttttcatttagcacaaatgtgcatc |
121 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| |||| || |||| || |||| ||| || |||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
15966729 |
cactttcaaaggataatactcttactggcaacgttaaaagaacgatgcgtgaatctcacccctagattaatatatttttcatttcgcacacttgtgcatc |
15966828 |
T |
|
| Q |
122 |
tatctt |
127 |
Q |
| |
|
|||||| |
|
|
| T |
15966829 |
tatctt |
15966834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 191
Target Start/End: Original strand, 15966860 - 15966921
Alignment:
| Q |
130 |
tccacatgtttctttgatttacaattttaggcttgttacatgcaaacctgtcaactaaagaa |
191 |
Q |
| |
|
|||||| ||||||| ||||||||| |||| ||||||||| | ||||||||||| ||||||| |
|
|
| T |
15966860 |
tccacacgtttcttcgatttacaactttatacttgttacacgtaaacctgtcaattaaagaa |
15966921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University