View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19210_high_2 (Length: 836)
Name: NF19210_high_2
Description: NF19210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19210_high_2 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 704; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 704; E-Value: 0
Query Start/End: Original strand, 38 - 836
Target Start/End: Complemental strand, 55931101 - 55930303
Alignment:
| Q |
38 |
ctcaaagtttcatatcatgcatcttctcacacatttcttcgaaagagtaaactgtcatttaacataaacaaataggtacagtaaacaaatggtccagaac |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
55931101 |
ctcaaagtttcatatcatgcatcttctcacacatttcttcgaaagagtaaactgtcatttaacataaacacataggtacagtaaacaaatggtccagaac |
55931002 |
T |
|
| Q |
138 |
tcagattattgctacaaatattcaaagaagaaaaaggggggcaatnnnnnnnntactcaaaagcagccaatatttatacttaggttgttctttgggtcgc |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55931001 |
tcagattattgctacaaatattcaaagaagaaaaaggggggcaataaaaaaaatactcaaaagcagccaatatttatacttaggttgttctttgggtcgc |
55930902 |
T |
|
| Q |
238 |
ccttaaaacatattgaagagattcttgaagcaatacccattgagtttgttaatagccctctgagcatcttctctgctaacaaatgacaaagccaaaaccc |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55930901 |
ccttaaaacatattgaagagattcttgaagcaatacccattgagtttgttaatagccctctgagcatcttctctgctaacaaatgacaaagccaaaaccc |
55930802 |
T |
|
| Q |
338 |
ctactcaatccagtcttgtgatcaatagcaacattggcacccatcacaacaccaaaaggccggaaagatcggtcatcgtgtacaaaacaaccattcatga |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
55930801 |
ctactcaatccagtcttgtgatcaatagcaacattggcacccgtcacaacaccaaaaggccggaaagatcggtcatcgtgtataaaacaaccattcatga |
55930702 |
T |
|
| Q |
438 |
attaaattagattgctcaattaatgaattgtaaagatttaatagaaccaactaattgataatgtatttctgtacaaaaattaaaattacacaacttttgc |
537 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55930701 |
attaaattagattgctcaattaatgaattgtaaagatttaatagaaccaactaattgataatgtatttctgtacaaaaattaaaattacacaacttttgc |
55930602 |
T |
|
| Q |
538 |
acagaagaccaaatttatacaaagattatgacctttcaacattgtagtgtcatcactcaatctaatccaaaaactgacttgaacactgcagggagaaagg |
637 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55930601 |
acagaagaccaaatttatacaaagattatgacctttcaacattgtagtgtcatcactcaatctaatccaaaaactgacttgaacactgcagggagaaagg |
55930502 |
T |
|
| Q |
638 |
caatggggtgaagnnnnnnnnnnnnnnnnncaaacatatttcctcaccactcaataaattactacctcctcaccacatgccaagcaacattgaccataca |
737 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
55930501 |
caatggggtgaagaaaaaataaaatgaaaacaaacatatttcctcaccactcaataaattactacctcctcaccacatgccaagcaacattgaccttaca |
55930402 |
T |
|
| Q |
738 |
tgacaatctctggcttcagaatattcgacttaaactccttatggggcaaaaccacaccaccattgctgtaaatctcatcacagacatgtacatcttctc |
836 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55930401 |
tgacaatctctggcttcagaatattcgacttaatctccttatggggcaaaaccacaccaccattgctgtaaatctcatcacagacatgtacatcttctc |
55930303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 7e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 686 - 836
Target Start/End: Complemental strand, 34586301 - 34586148
Alignment:
| Q |
686 |
actcaataaattactacctcctc---accacatgccaagcaacattgaccatacatgacaatctctggcttcagaatattcgacttaaactccttatggg |
782 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||| |||||||| |||| |||||||||||||||||||||||||||| | ||||| |||||| |||| |
|
|
| T |
34586301 |
actcaataagttactacctcctccttaccacatgctgagcaacatagacctcacatgacaatctctggcttcagaatatttgtcttaatctccttgtggg |
34586202 |
T |
|
| Q |
783 |
gcaaaaccacaccaccattgctgtaaatctcatcacagacatgtacatcttctc |
836 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
34586201 |
gtaaaaccacaccaccattgctgtaaatctcatcacaaacatgaacatcttctc |
34586148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 458 - 637
Target Start/End: Complemental strand, 34586537 - 34586352
Alignment:
| Q |
458 |
taatgaattgtaaagatttaatagaaccaactaattgataatgtatttctgtacaaaaattaaaattacacaacttttgcacagaagaccaaatttat-- |
555 |
Q |
| |
|
|||||| ||| ||||| || || ||| ||||||||||||||| ||||||| |||| || |||||||||||||||||||||||| ||||||||| || |
|
|
| T |
34586537 |
taatgagttgcaaagacttgatggaaacaactaattgataatttatttctatacataacttaaaattacacaacttttgcacaaaagaccaaaccgatgc |
34586438 |
T |
|
| Q |
556 |
-----acaaagattatgacctttcaacattgtagtgtcatcactcaatctaatccaaaaactgacttgaacactgcagggagaaagg |
637 |
Q |
| |
|
|||| |||||||||||||||| |||||| || |||||||||||||||||| |||||||||||| |||||| ||||||||||| |
|
|
| T |
34586437 |
cctttacaaggattatgacctttcaatattgtaatggcatcactcaatctaatcc-aaaactgacttgtacactgtagggagaaagg |
34586352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 4e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 274 - 371
Target Start/End: Complemental strand, 45340744 - 45340645
Alignment:
| Q |
274 |
ccattgagtttgttaatagccctctgagcatcttctctgctaacaaa--tgacaaagccaaaacccctactcaatccagtcttgtgatcaatagcaacat |
371 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||| |||||||| |||||||||||||||| |
|
|
| T |
45340744 |
ccattgagtttgttgatagccctctgagcatcttccctgctaacaaagttgacaaagccaaagcccctactcatgccagtcttttgatcaatagcaacat |
45340645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 274 - 343
Target Start/End: Complemental strand, 11853103 - 11853032
Alignment:
| Q |
274 |
ccattgagtttgttaatagccctctgagcatcttctctgctaacaaa--tgacaaagccaaaacccctactc |
343 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||| ||| | ||||| ||||||||||||| ||||||||| |
|
|
| T |
11853103 |
ccattcagtttgttaatagctctctgagcatcttccctgttgacaaagttgacaaagccaaaccccctactc |
11853032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 773 - 836
Target Start/End: Complemental strand, 30921801 - 30921738
Alignment:
| Q |
773 |
tccttatggggcaaaaccacaccaccattgctgtaaatctcatcacagacatgtacatcttctc |
836 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||||| | ||||| |||||||||| |
|
|
| T |
30921801 |
tccttgtggggcaaaaccacaccaccattgctgtaaacttcatcagatacatggacatcttctc |
30921738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University