View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19210_high_24 (Length: 323)

Name: NF19210_high_24
Description: NF19210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19210_high_24
NF19210_high_24
[»] chr6 (3 HSPs)
chr6 (1-242)||(27842330-27842571)
chr6 (246-305)||(18489068-18489127)
chr6 (246-300)||(16478279-16478333)
[»] chr3 (1 HSPs)
chr3 (246-305)||(30044588-30044647)
[»] scaffold0153 (1 HSPs)
scaffold0153 (246-308)||(24285-24347)
[»] chr1 (1 HSPs)
chr1 (246-311)||(7638303-7638368)
[»] chr4 (3 HSPs)
chr4 (246-308)||(14454586-14454648)
chr4 (246-300)||(42397386-42397440)
chr4 (251-300)||(26892684-26892733)
[»] chr5 (1 HSPs)
chr5 (246-300)||(21824577-21824631)
[»] chr2 (1 HSPs)
chr2 (38-121)||(12252826-12252907)
[»] chr8 (1 HSPs)
chr8 (251-300)||(39919988-39920037)


Alignment Details
Target: chr6 (Bit Score: 173; Significance: 5e-93; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 27842571 - 27842330
Alignment:
Q  1 aaatattcgagacatttgtcaaatacatatnnnnnnntctaaaattaataaacttcaataaccaaagtctcacgtcaacttcaaaaatagtgagtgtgca 100  Q
    ||||||||||||||||||| ||||||||||       ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||    
T  27842571 aaatattcgagacatttgtgaaatacatataaaaaaatctaaaattaatacacttcaataaccaaagtctcacgtcaacttcaaaaatagtgaatttgca 27842472  T
Q  101 atcaagtctcacacatcaatttcatcgtaatacaaatcaaaaatactaaaattttcaaaataaaacactcactatctcttaaccaaagtgtctttccatt 200  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  27842471 atcaaatctcacacatcaatttcatcgtaatacaaatccaaaatactaaaattttcaaaataaaacactcattatctcttaaccaaagtgtgtttccatt 27842372  T
Q  201 tctccatgtctttgtttgtgactttgtaaacgaaaaagaaaa 242  Q
    | || ||||||||||||||||||||| |||||||||| ||||    
T  27842371 tttctatgtctttgtttgtgactttgcaaacgaaaaaaaaaa 27842330  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 18489068 - 18489127
Alignment:
Q  246 atggttatacggttaaggggacttattgtttcttaaccaatatggaggttcaggtgactg 305  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  18489068 atggttatacggttaaggggacttattgtttcttaactaatatggaggttcaggtaactg 18489127  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 246 - 300
Target Start/End: Complemental strand, 16478333 - 16478279
Alignment:
Q  246 atggttatacggttaaggggacttattgtttcttaaccaatatggaggttcaggt 300  Q
    ||||||| | ||||||||||||||||||||||||||| |||||||||||||||||    
T  16478333 atggttaaaaggttaaggggacttattgtttcttaactaatatggaggttcaggt 16478279  T

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Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 30044588 - 30044647
Alignment:
Q  246 atggttatacggttaaggggacttattgtttcttaaccaatatggaggttcaggtgactg 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30044588 atggttatacggttaaggggacttattgtttcttaaccaatatggaggttcaggtgactg 30044647  T

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Target: scaffold0153 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 246 - 308
Target Start/End: Original strand, 24285 - 24347
Alignment:
Q  246 atggttatacggttaaggggacttattgtttcttaaccaatatggaggttcaggtgactgatg 308  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  24285 atggttatacggttaaggggacttattgtttcttaaccaataaggaggttcaggtgactgatg 24347  T

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Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 246 - 311
Target Start/End: Complemental strand, 7638368 - 7638303
Alignment:
Q  246 atggttatacggttaaggggacttattgtttcttaaccaatatggaggttcaggtgactgatgatg 311  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||    
T  7638368 atggttatacggttaaggggacttattgtttcttaaccattatggaggttcaggtaactggtgatg 7638303  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 246 - 308
Target Start/End: Complemental strand, 14454648 - 14454586
Alignment:
Q  246 atggttatacggttaaggggacttattgtttcttaaccaatatggaggttcaggtgactgatg 308  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||    
T  14454648 atggttatacggttaaggggacttattgtttcttaacgaatacggaggttccggtgactgatg 14454586  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 300
Target Start/End: Complemental strand, 42397440 - 42397386
Alignment:
Q  246 atggttatacggttaaggggacttattgtttcttaaccaatatggaggttcaggt 300  Q
    |||| ||||||||||||||| |||| ||||||||||| ||||||| |||||||||    
T  42397440 atggctatacggttaaggggtcttactgtttcttaactaatatggcggttcaggt 42397386  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 300
Target Start/End: Original strand, 26892684 - 26892733
Alignment:
Q  251 tatacggttaaggggacttattgtttcttaaccaatatggaggttcaggt 300  Q
    ||||| |||||||||||||||||||||||||| ||||||| || ||||||    
T  26892684 tatacagttaaggggacttattgtttcttaactaatatggcgggtcaggt 26892733  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 246 - 300
Target Start/End: Original strand, 21824577 - 21824631
Alignment:
Q  246 atggttatacggttaaggggacttattgtttcttaaccaatatggaggttcaggt 300  Q
    ||||||| | ||||||||||||||||||||||||||| |||||||||||||||||    
T  21824577 atggttaaaaggttaaggggacttattgtttcttaactaatatggaggttcaggt 21824631  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 121
Target Start/End: Complemental strand, 12252907 - 12252826
Alignment:
Q  38 tctaaaattaataaacttcaataaccaaagtctcacgtcaacttcaaaaatagtgagtgtgcaatcaagtctcacacatcaatt 121  Q
    ||||||||||| | ||||||||||| |||||||||||||||||| ||||| |   ||||| ||||||| ||||||||| |||||    
T  12252907 tctaaaattaaaacacttcaataactaaagtctcacgtcaacttaaaaaaaa--aagtgtacaatcaaatctcacacaccaatt 12252826  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 300
Target Start/End: Complemental strand, 39920037 - 39919988
Alignment:
Q  251 tatacggttaaggggacttattgtttcttaaccaatatggaggttcaggt 300  Q
    ||||| |||||||||||||| || |||||||| |||||||||| ||||||    
T  39920037 tatacagttaaggggacttactgcttcttaactaatatggagggtcaggt 39919988  T

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