View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19210_high_29 (Length: 299)

Name: NF19210_high_29
Description: NF19210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19210_high_29
NF19210_high_29
[»] chr5 (1 HSPs)
chr5 (14-299)||(29907321-29907614)


Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 14 - 299
Target Start/End: Original strand, 29907321 - 29907614
Alignment:
Q  14 agaacacaaataaactatagcatggaaacaatagattagaaagtt--------acatacgtaaatacatcacatttctcgtgagaccgcatgaggatata 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||        ||||||||||| |||||||||||||||||||||||||||||||||||    
T  29907321 agaacacaaataaactatagcatggaaacaatagattagaaagttcagcagcaacatacgtaaacacatcacatttctcgtgagaccgcatgaggatata 29907420  T
Q  106 aagcaaaatacatcacatttcaatccttgacaaccttagcagacttggctgatttctttgacctcttccgagaaacctcatcaaatccttcaccaaactc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29907421 aagcaaaatacatcacatttcaatccttgacaaccttagcagacttggctgatttctttgacctcttccgagaaacctcatcaaatccttcaccaaactc 29907520  T
Q  206 ctcttggcatgatgactggaagtagcaaacaacgttgtcgtcgttcaaatcaggggtgggtattaaattggaggtcaaaccttagcagagccaa 299  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||    
T  29907521 ctcttggcatgatgactggaagtagcaaacaacattgtcgtcgttcaaatcaggggtgagtattaaattggaggtcaaacctcaggagagccaa 29907614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University