View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19210_high_32 (Length: 278)
Name: NF19210_high_32
Description: NF19210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19210_high_32 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 11 - 264
Target Start/End: Complemental strand, 38742228 - 38741976
Alignment:
| Q |
11 |
agggagattaagagtgttagagaaaatgttggacaaagaattactttggttaaagttagggcaaatgtcaaggcataggagacatggaggaagacttaga |
110 |
Q |
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| T |
38742228 |
agggagattaagagtgttagagaaaatgttggacaaagaattactttgattaaagagagggcaa-tgtcaaggcataggagacatggaggaagacttaga |
38742130 |
T |
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| Q |
111 |
aacttgaaattcttaatttttaagggaatgttgatctagagaaacatacttatattcagagctaaaattggaacaaatatttagttaccatgaagttagg |
210 |
Q |
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| T |
38742129 |
aacttgaaattcttaatttttaagggaatgttgatttagagaaacatacttaaattcagagctaaaagtggaacaaatatttagttaccatgaagttagg |
38742030 |
T |
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| Q |
211 |
gaagaatggaaagtgaagttagcaactttgaagttcacaaatcatggtggaatc |
264 |
Q |
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| T |
38742029 |
gaagaatggaaagtgaagttagcaactttgaagttcacaaatcatggtggaatc |
38741976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 108 - 264
Target Start/End: Original strand, 38784394 - 38784550
Alignment:
| Q |
108 |
agaaacttgaaattcttaatttttaagggaatgttgatctagagaaacatacttatattcagagctaaaattggaacaaatatttagttaccatgaagtt |
207 |
Q |
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||||| || |||||| ||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
38784394 |
agaaatttaaaattcctaaattttaaggaaaggttgatctagagaaacatacttatattcagagctaaaattggaacaaatatttagttaccatgaattt |
38784493 |
T |
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| Q |
208 |
agggaagaatggaaagtgaagttagcaactttgaagttcacaaatcatggtggaatc |
264 |
Q |
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| T |
38784494 |
agggaggaatggaaagtgaagttagcaactttgaagttcacaaatcatggtggaatc |
38784550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 38784242 - 38784343
Alignment:
| Q |
11 |
agggagattaagagtgttagagaaaatgttggacaaagaattactttggttaaagttagggcaaatgtcaaggcataggagacatggaggaagacttaga |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38784242 |
agggagattaagagtgttagagaaaatgttggacaaagaattactttgattaaagagagggc-aatgtcaaggcataggagacatggaggaagacttaga |
38784340 |
T |
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| Q |
111 |
aac |
113 |
Q |
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||| |
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| T |
38784341 |
aac |
38784343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 38790406 - 38790453
Alignment:
| Q |
18 |
ttaagagtgttagagaaaatgttggacaaagaattactttggttaaag |
65 |
Q |
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| T |
38790406 |
ttaagagtgttagtgaaaatgttggacaaagaattactttggttaaag |
38790453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 38790645 - 38790694
Alignment:
| Q |
128 |
ttttaagggaatgttgatctagagaaacatacttatattcagagctaaaa |
177 |
Q |
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||||||||||| |||||| |||||||||||||||||||| |||||||||| |
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| T |
38790645 |
ttttaagggaaggttgatatagagaaacatacttatatttagagctaaaa |
38790694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 108 - 252
Target Start/End: Complemental strand, 30961506 - 30961364
Alignment:
| Q |
108 |
agaaacttgaaattcttaatttttaagggaatgttgatctagagaaacatacttatattcagagctaaaattggaacaaatatttagttaccatgaagtt |
207 |
Q |
| |
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||||||||||||||| |||||||||| |||| |||||||| |||||||| |||| ||| ||||| | || ||||||||| |||||||||||| |||||| |
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| T |
30961506 |
agaaacttgaaattcctaatttttaaaggaaggttgatct--agaaacatgcttacattgagagcaataagtggaacaaa-atttagttaccacgaagtt |
30961410 |
T |
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| Q |
208 |
a-gggaagaatggaaagtgaagttagcaactttgaagttcacaaat |
252 |
Q |
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| |||| ||| |||||||||||||||||||||| ||||||||||| |
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| T |
30961409 |
aggggaggaaaggaaagtgaagttagcaacttttgagttcacaaat |
30961364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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