View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19210_high_33 (Length: 273)
Name: NF19210_high_33
Description: NF19210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19210_high_33 |
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Alignment Details
Target: chr7 (Bit Score: 134; Significance: 8e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 93 - 254
Target Start/End: Original strand, 27608795 - 27608957
Alignment:
| Q |
93 |
aatattggaatcagggaaatatcttatctagagtnnnnnnn-ttaccttcaaataaatgtcaatggctctataaagaccatcatcaatgacacgagcata |
191 |
Q |
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| T |
27608795 |
aatattggaatcagggaaatatcttatctagagtaaaaaaaattaccttcaaataaatgtcaatggctctataaagaccatcatcaatgacacgagcata |
27608894 |
T |
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| Q |
192 |
atcaggaagtatctcaatcaatgcgatgaatttctgtagacttaagcaaggatcaggagcaat |
254 |
Q |
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| T |
27608895 |
atcaggaagtatctcaatcaatgcgatgaatttctgtagacttaagcaaggatcaggagcaat |
27608957 |
T |
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Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 27608677 - 27608773
Alignment:
| Q |
1 |
gtgcattgtcaacatgaagtaggaaaagtgaataagaataacaaacagaaacaactgattagttttgtatgtgtaactgttgcatgattgagaatat |
97 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27608677 |
gtgcattgtcaacatgaagtaggaaaagtgaataagaataacaaacaggaacaactgattagttttgtatgtgtaactgttgcatgattgagaatat |
27608773 |
T |
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