View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19210_high_4 (Length: 672)
Name: NF19210_high_4
Description: NF19210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19210_high_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 627; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 1 - 655
Target Start/End: Original strand, 3978409 - 3979062
Alignment:
| Q |
1 |
aatttctggcctatcttctggtctttgttgaacacataataacgcaatttgtatgcatcgaacgacttctgagggtgtacattgttgccctaaactttca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3978409 |
aatttctggcctatcttctggtctttgttgaacacataataacgcaatttgtatgcatcgaacgacttctgagggtgtacattgttgccctaaactttca |
3978508 |
T |
|
| Q |
101 |
tccaatagttccaatgccctctcttctgtccataatctccatgcctataatggtaagaatcatattagtgagtaagcaacgattcgagtatttgtgtttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3978509 |
tccaatagttccaatgccctctcttctgtccataatctccatgcctataatggtaagaatcatattagtgagtaagcaacgattcgagtatt-gtgtttg |
3978607 |
T |
|
| Q |
201 |
attttgcagtgtcgaaagttgattttgaataaaacttttttgtaaagtttatttcggttaatagttggatgtaaaatgatttatggatgacaaaagtaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3978608 |
attttgcagtgtcgaaagttgattttgaataaaacttttttgtgaagtttatttcggttaatagttggatgtaaaatgatttatggatgacaaaagtaaa |
3978707 |
T |
|
| Q |
301 |
accgaacattgactaaataagcaagtttgtgaattcaatatgcttacatatccaagaagatagttggaatattctgagtctgaaaaatctctattcttct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3978708 |
accgaacattgactaaataagcaagtttgtgaattcaatatgcttacatatccaagaagatagttggaatattctgagtctgaaaaatctctattcttct |
3978807 |
T |
|
| Q |
401 |
ttccggacacaatctccagtactatcacaccataactaaaaacatctgatttcgttgagaaatgtccactcctagcgtactctggaggcatgtaaccgct |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3978808 |
ttccggacacaatctccagtactatcacaccataactaaagacatctgatttcgttgagaaatgtccactcctagcgtactctggaggcatgtaaccgct |
3978907 |
T |
|
| Q |
501 |
gaatatataattttcaaagtaagtattactcgacggtgcaataatcaagagttataatcgagtagaaactaacttactatgttccggccaccctatttgt |
600 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3978908 |
gaatatataattttcaaagtacgtattactcgacggtgcaataatcaagagccataatcgagtagaaactaacttactatgttccggccaccctatttgt |
3979007 |
T |
|
| Q |
601 |
gttttcctcaacttgctctccgaaaaatgttcgagccaaaccaaagtctgatatt |
655 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3979008 |
gttttcctcaacttgctctccgaaaaatgttcgagccaaaccaaagtctgatatt |
3979062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 378 - 640
Target Start/End: Original strand, 3983455 - 3983713
Alignment:
| Q |
378 |
gtctgaaaaatctctattcttctttccggacacaatctccagtactatcacaccataactaaaaacatctgatttcgttgagaaatgtccactcctagcg |
477 |
Q |
| |
|
||||||||| ||||||||||||||| |||||| ||||| |||| ||||||||||||| ||| |||||||||||||| |||||| ||||||||||||| |
|
|
| T |
3983455 |
gtctgaaaattctctattcttctttacggacataatctatggtaccatcacaccataaccaaagacatctgatttcgtagagaaacgtccactcctagca |
3983554 |
T |
|
| Q |
478 |
tactctggaggcatgtaaccgctgaatatataattttcaaagtaagtattactcgacggtgcaataatcaagagttataatcgagtagaaactaacttac |
577 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||| | ||||| | || ||||| |||||||||||||||| |
|
|
| T |
3983555 |
tactctggaggcatgtaaccgctgaatatataattttcaaactaagtattattagacaatacaata---aggatccataataaggtagaaactaacttac |
3983651 |
T |
|
| Q |
578 |
tatgttccggccaccctatttgtgttttcctcaacttgctctccgaaaaatgttcgagccaaa |
640 |
Q |
| |
|
|||||| |||| |||||||||||| ||| ||||||||||||||| ||||| |||||||||||| |
|
|
| T |
3983652 |
tatgtttcggcaaccctatttgtg-tttgctcaacttgctctcctaaaaacgttcgagccaaa |
3983713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University