View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19210_high_9 (Length: 450)
Name: NF19210_high_9
Description: NF19210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19210_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 15 - 435
Target Start/End: Complemental strand, 3729749 - 3729335
Alignment:
| Q |
15 |
ttatggtttaggttagacacatcatatgataggtcagagattcatatcgattggtctggtctattctcacctttacgtgttacctttagattatttgatt |
114 |
Q |
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| T |
3729749 |
ttatggtttaggttagacacatcatatgataggtcatagactcatatcgattggtgtggtctattctcacctttacgtgtcacctttaaattatttgatt |
3729650 |
T |
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| Q |
115 |
tacggttcaataaactttgttatgttttagtttctagacaacctatatggacaaattaaaacaaattgctaatagtaaattaaaattttgattttcagct |
214 |
Q |
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| T |
3729649 |
tacggttcaataaactttgtcatgttttagtttctagacaacctatatggacaaattaaaacaaattgctaatagtaaattaaaattttgattttcagct |
3729550 |
T |
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| Q |
215 |
caataaactctgtcacatgttggcttctgaagagactatatgggcataccatttcaaatatattcaacttgttttgtcatgtctacctatattagttcca |
314 |
Q |
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| T |
3729549 |
ccataaactctgtcacatgttggcttctgaagagactatatgggcataccatttcaaatatattcaacttgttttgtcatgtctacctatataagttcca |
3729450 |
T |
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| Q |
315 |
atatatacatatagaaagnnnnnnnnctatttactatttagatttagaaatcatgatttcctcaactagtaaattatgcactgtcttcatgttcatctgt |
414 |
Q |
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| T |
3729449 |
atatatacatatagaaa-----aaaactatttactatttaga-ttagaaatcatgatttcctcaactagtaaattatgcactgtcttcatgttcatctgt |
3729356 |
T |
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| Q |
415 |
ctcgtcgttcttcttatttct |
435 |
Q |
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| T |
3729355 |
ctcgtcgttcttcttatttct |
3729335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 157 - 329
Target Start/End: Complemental strand, 3740743 - 3740574
Alignment:
| Q |
157 |
ctatatggacaaattaaaacaaattgctaatagtaaattaaaattttgattttcagctcaataaactctgtcacatgttggcttctgaagagactatatg |
256 |
Q |
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| T |
3740743 |
ctatatggacagattaaaacaaattgataata-taaataaaaaaattgattttcagctcaatacacttt-tcaca-gttggctcttagagagactatatc |
3740647 |
T |
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| Q |
257 |
ggcataccatttcaaatatattcaacttgttttgtcatgtctacctatattagttccaatatatacatataga |
329 |
Q |
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| T |
3740646 |
gacatatcattttaaaaatattcaacttgttttgtcatgtctacctatattagttctaatatatacatataga |
3740574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 39 - 329
Target Start/End: Complemental strand, 3737488 - 3737198
Alignment:
| Q |
39 |
tatgataggtcagagattcatatcgattggtctggtctattctcacctttacgtgttacctttagattatttgatttacggttcaataaactt-tgttat |
137 |
Q |
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| T |
3737488 |
tatgatagatcgcagactcatgtcggttggtctggtctattctcacccttacatacaaccttcaaactatttgatttcttgtcaaataaacttctgtcat |
3737389 |
T |
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| Q |
138 |
gttttagtttctagacaacctatatggacaaattaaaacaaattgctaatagtaaattaaaattttgattttcagctcaataaactctgtcacatgttgg |
237 |
Q |
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| T |
3737388 |
cttttagatcctaaagaaactattggcacaaattaaaa-aaattgataataataaattaaaattttgatttttagaccaataagcgttgtcacatcttgg |
3737290 |
T |
|
| Q |
238 |
cttctgaagagactatatgggcataccatttcaaatatattcaacttgttttgtcatgtctacctatattagttccaatatatacatataga |
329 |
Q |
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|| || |||||||||||||||| ||||||||| || || |||| |||||||||| ||||| |||| | ||| ||||||||||||||||| |
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| T |
3737289 |
ctcctagagagactatatgggcaggtcatttcaaaaatgttaaactagttttgtcatatctacttatactggtttcaatatatacatataga |
3737198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 349 - 436
Target Start/End: Complemental strand, 3740534 - 3740447
Alignment:
| Q |
349 |
tatttagatttagaaatcatgatttcctcaactagtaaattatgcactgtcttcatgttcatctgtctcgtcgttcttcttatttctg |
436 |
Q |
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| T |
3740534 |
tatttagatttagaaatcatgatttcctcgactagtaaattctacactgtcttcatgttcatttgtcttgtcgttctccttatttctg |
3740447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 71 - 236
Target Start/End: Complemental strand, 3740925 - 3740760
Alignment:
| Q |
71 |
tggtctattctcacctttacgtgttacctttagattatttgatttacggttcaataaactttgttatgttttagtttctagacaacctatatggacaaat |
170 |
Q |
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| T |
3740925 |
tggtctattatcacccttacatataaccttcaaattatttgatttcttgttcaataagttttgtcatggtttacctcctagatagactatatgtacaaat |
3740826 |
T |
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| Q |
171 |
taaaacaaattgctaatagtaaattaaaattttgattttcagctcaataaactctgtcacatgttg |
236 |
Q |
| |
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| T |
3740825 |
taaaagaaattgataataataaattaaaagtttgatttccagccccataaactttgtcaaatgttg |
3740760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 257
Target Start/End: Complemental strand, 3755322 - 3755236
Alignment:
| Q |
171 |
taaaacaaattgctaatagtaaattaaaattttgattttcagctcaataaactctgtcacatgttggcttctgaagagactatatgg |
257 |
Q |
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|||||||||||| ||||| |||||| |||||| ||||||| || ||||||||| ||||| | |||||| || || ||||||||||| |
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| T |
3755322 |
taaaacaaattgataataataaattgaaatttagattttcggcccaataaactttgtcatgtcttggctcctaaatagactatatgg |
3755236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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