View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19210_low_11 (Length: 444)
Name: NF19210_low_11
Description: NF19210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19210_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 246 - 426
Target Start/End: Complemental strand, 34704497 - 34704317
Alignment:
| Q |
246 |
cagtcaagcaatggaatgagagcatgatttctaggttgcgtccagacattggaatatcgaaatagaaaggagggaatttgaatgaggcaggaggattttt |
345 |
Q |
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| T |
34704497 |
cagtcaagcaatggaatgagagcatgatttctaggttgcgtccagacattggaatatcgaaatagaaaggagggaatttgaatgaggcaggaggattttt |
34704398 |
T |
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| Q |
346 |
gaatgagaataaacatggtgtgtatgttagttatatatagttcataactgaaggaataagagatgtgttggaaacagaaac |
426 |
Q |
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| T |
34704397 |
gaatgagaataaacatggtgtgtatgttagttatatatagttcataactgaaggaataagagatgtgttggaaacagaaac |
34704317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 11 - 186
Target Start/End: Complemental strand, 34704732 - 34704557
Alignment:
| Q |
11 |
cacagattaaaacaacaaatcctcatacgcaggttgttgatagtcctgtccatctctgaaaccggattactcatcaaaggacatttccagtaaggaatat |
110 |
Q |
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| T |
34704732 |
cacagattaaaacaacaaatcctcatacgcaggttgttgatagtcctgtccatctctgaaaccggattactcatcaaaggacatttccagtaaggaatat |
34704633 |
T |
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| Q |
111 |
tgttatttggaatgtatttatagatgaaagatatgagggtgaagagcaatacgttgcacctaaggattaaacatag |
186 |
Q |
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| T |
34704632 |
tgttatttggaatgtatttatagatgaaagatatgagggtgaagagcaatacgttgcacctaaggattaaacatag |
34704557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 377 - 426
Target Start/End: Complemental strand, 16965463 - 16965414
Alignment:
| Q |
377 |
tatatatagttcataactgaaggaataagagatgtgttggaaacagaaac |
426 |
Q |
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| T |
16965463 |
tatatatagttcataactgaatgtataagggatgtgttggaaacagaaac |
16965414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 377 - 426
Target Start/End: Complemental strand, 38506269 - 38506220
Alignment:
| Q |
377 |
tatatatagttcataactgaaggaataagagatgtgttggaaacagaaac |
426 |
Q |
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| T |
38506269 |
tatatatagttcataattgaaggtataagggatgtattggaaacagaaac |
38506220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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