View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19210_low_12 (Length: 441)
Name: NF19210_low_12
Description: NF19210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19210_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 165 - 428
Target Start/End: Original strand, 46822905 - 46823168
Alignment:
| Q |
165 |
cattttgaagtccttttttaagtattggcttgctgaaaaggggaacttatcggcttgattcaagacatctataaatgagttgatctaccattttcaaata |
264 |
Q |
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| T |
46822905 |
cattttgaagtccttttttaagtattggcttgctgaaaaggggaacttatcggcttgattcaagacatctataaatgagttgatctaccattttcaaata |
46823004 |
T |
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| Q |
265 |
tctttttcttgtgaatctcttttctcacctaccacacttctcaaaggcttttgatttgtccgaattttagaatctgaacatgtnnnnnnnngccaagagt |
364 |
Q |
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| T |
46823005 |
tctttttcttgtgaatctcttttctcacccaccacacttctcaaaggctcttgatttgtccgaattttagaatccgaacatgtaaaaaaaagccaagagt |
46823104 |
T |
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| Q |
365 |
cttcgaaatgtatgagggtgggaaaagaaagagtagtcctttctcaaactacacaattgggtct |
428 |
Q |
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| T |
46823105 |
ctttgagatgtatgagggtgggaaaataaagagtagtcctttctcaaactacacaattgggtct |
46823168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 46822755 - 46822880
Alignment:
| Q |
16 |
tttataaattgagatcctctctatttatcaaaagaaataaagatatnnnnnnn-taaacaaattgagtcctccaattcattcttt-atgtccaaagaacc |
113 |
Q |
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| T |
46822755 |
tttattaattgagatcctctctatttatcaaaagaaataaagatataaaaaaaataaacaaattgagtcctccaattcattcttttatgtccaaagaacc |
46822854 |
T |
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| Q |
114 |
aacaaccatttcgcagtcctttcctc |
139 |
Q |
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| T |
46822855 |
aacaaccatttcgcagtcctttcctc |
46822880 |
T |
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