View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19210_low_16 (Length: 403)
Name: NF19210_low_16
Description: NF19210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19210_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 22 - 385
Target Start/End: Original strand, 14060054 - 14060417
Alignment:
| Q |
22 |
taggaagtcttagttctccactcaaccacttagacttgaaagaaacgttactccatgtccatgcatctgtcttatttggtttcactcgaattcctattat |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14060054 |
taggaagtcttagttctccactcaaccacttagacttgaaagaaacgttactccatgtccatgcatctgtcttatttggtttcactcgaattcctattat |
14060153 |
T |
|
| Q |
122 |
ttttagatcccttatgcttttataagtattccaattacaactaagaacttcttcatcgtcatcatcttcttggtttaaggttgtattttccccggtttga |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14060154 |
ttttagatcccttatgcttttataagtattccaattacaactaagaacttcttcatcgtcatcatcttcttggtttaaggttgtattttccccggtttga |
14060253 |
T |
|
| Q |
222 |
ttgggttcatttccttctgattgtgtttccatctgaccttgttcttcaacgtcaattcccaaatcggacgtcaagtacatcaagcgcgaagaatctagta |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14060254 |
ttgggttcatttccttctgattgtgtttccatctgaccttgttcttcaacgtcgattcccaaatcggacgtcaagtacatcaagcgcgaagaatctagta |
14060353 |
T |
|
| Q |
322 |
tatgaaatggtttaggatttttcaatggaatcattgtcattccataacgtttgcatgcacccat |
385 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14060354 |
tatgaaatggtttaggatttttcaatggaatcattgtcattccataacgtttgcatgcacccat |
14060417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 22 - 385
Target Start/End: Original strand, 14048683 - 14049046
Alignment:
| Q |
22 |
taggaagtcttagttctccactcaaccacttagacttgaaagaaacgttactccatgtccatgcatctgtcttatttggtttcactcgaattcctattat |
121 |
Q |
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||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
14048683 |
taggaagtcgtagttctccactcaaccacttagacttgaaggaaacgttactccatgtccatgcatctgtcttatttggtttcactcgaattcctaccat |
14048782 |
T |
|
| Q |
122 |
ttttagatcccttatgcttttataagtattccaattacaactaagaacttcttcatcgtcatcatcttcttggtttaaggttgtattttccccggtttga |
221 |
Q |
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||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
14048783 |
ttttagatcccttatgcttttataagtattccattaacaactaagaacttcttcatcatcatcatcttcttggtttaaggttgtattttcccctgtttga |
14048882 |
T |
|
| Q |
222 |
ttgggttcatttccttctgattgtgtttccatctgaccttgttcttcaacgtcaattcccaaatcggacgtcaagtacatcaagcgcgaagaatctagta |
321 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14048883 |
ttgggttcatttccttctgaatgtgtttccatctgaccttgttcttcaatgtcgattcccaaatcggacgtcaagtacatcaagcgcgaagaatctagta |
14048982 |
T |
|
| Q |
322 |
tatgaaatggtttaggatttttcaatggaatcattgtcattccataacgtttgcatgcacccat |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
14048983 |
tatgaaatggtttaggatttttcaatggaatcaatgtcattccataacgtttacatgcacccat |
14049046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 22 - 158
Target Start/End: Complemental strand, 15921456 - 15921320
Alignment:
| Q |
22 |
taggaagtcttagttctccactcaaccacttagacttgaaagaaacgttactccatgtccatgcatctgtcttatttggtttcactcgaattcctattat |
121 |
Q |
| |
|
||||||| |||| ||||||||| ||||| ||||||||||| |||| ||||||||| |||| ||||||||||||||| | |||||||||||||| | | |
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| T |
15921456 |
taggaagccttaattctccactaaaccatttagacttgaacgaaatgttactccagttccactcatctgtcttatttgctaccactcgaattcctactgt |
15921357 |
T |
|
| Q |
122 |
ttttagatcccttatgcttttataagtattccaatta |
158 |
Q |
| |
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||||||||||| |||||| |||||||||||||||||| |
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| T |
15921356 |
ttttagatcccgtatgctcttataagtattccaatta |
15921320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 22 - 157
Target Start/End: Complemental strand, 15900406 - 15900271
Alignment:
| Q |
22 |
taggaagtcttagttctccactcaaccacttagacttgaaagaaacgttactccatgtccatgcatctgtcttatttggtttcactcgaattcctattat |
121 |
Q |
| |
|
||||||| |||||||| ||||| ||||| |||||||||||||||| ||||||||| ||||| |||||||||||||| | |||| ||||||||| | | |
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|
| T |
15900406 |
taggaagccttagttcgccactaaaccatttagacttgaaagaaatgttactccaggtccacttatctgtcttatttgctaccacttgaattcctactgt |
15900307 |
T |
|
| Q |
122 |
ttttagatcccttatgcttttataagtattccaatt |
157 |
Q |
| |
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||||||||||| |||||| ||||||||||||||||| |
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| T |
15900306 |
ttttagatcccgtatgctcttataagtattccaatt |
15900271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 22 - 157
Target Start/End: Original strand, 15873641 - 15873776
Alignment:
| Q |
22 |
taggaagtcttagttctccactcaaccacttagacttgaaagaaacgttactccatgtccatgcatctgtcttatttggtttcactcgaattcctattat |
121 |
Q |
| |
|
||||||| |||||||||||| | ||||| |||||| |||| |||| ||||||||| |||| ||||||||||||||| | |||| ||||||||| | | |
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| T |
15873641 |
taggaagccttagttctccattaaaccatttagacgtgaacgaaatgttactccagttccactcatctgtcttatttgctaccacttgaattcctactgt |
15873740 |
T |
|
| Q |
122 |
ttttagatcccttatgcttttataagtattccaatt |
157 |
Q |
| |
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|||||||||| |||||| ||||||||||||||||| |
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|
| T |
15873741 |
ctttagatcccgtatgctcttataagtattccaatt |
15873776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 15880450 - 15880504
Alignment:
| Q |
22 |
taggaagtcttagttctccactcaaccacttagacttgaaagaaacgttactcca |
76 |
Q |
| |
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||||||| |||||||||||| | ||||| ||||||||||| |||| ||||||||| |
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| T |
15880450 |
taggaagccttagttctccattaaaccatttagacttgaacgaaatgttactcca |
15880504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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