View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19210_low_17 (Length: 392)

Name: NF19210_low_17
Description: NF19210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19210_low_17
NF19210_low_17
[»] chr1 (7 HSPs)
chr1 (20-387)||(6137947-6138317)
chr1 (20-216)||(6139724-6139938)
chr1 (22-216)||(52022033-52022244)
chr1 (22-127)||(5397360-5397459)
chr1 (22-122)||(43834975-43835075)
chr1 (22-117)||(43835086-43835180)
chr1 (22-125)||(2595305-2595406)
[»] chr5 (12 HSPs)
chr5 (20-216)||(35429905-35430119)
chr5 (23-214)||(7400470-7400678)
chr5 (20-121)||(41341059-41341160)
chr5 (20-127)||(35428322-35428432)
chr5 (24-131)||(18009206-18009313)
chr5 (151-214)||(13661627-13661691)
chr5 (22-77)||(30921621-30921676)
chr5 (151-216)||(35428473-35428537)
chr5 (174-215)||(30921784-30921826)
chr5 (130-197)||(41340966-41341035)
chr5 (164-216)||(18009106-18009159)
chr5 (59-122)||(7658991-7659054)
[»] chr8 (5 HSPs)
chr8 (22-215)||(392310-392521)
chr8 (26-124)||(7278058-7278156)
chr8 (25-117)||(7284609-7284702)
chr8 (164-218)||(3581326-3581381)
chr8 (169-216)||(7278215-7278263)
[»] chr7 (8 HSPs)
chr7 (20-217)||(5448861-5449076)
chr7 (22-217)||(5439853-5440066)
chr7 (20-121)||(5438858-5438959)
chr7 (20-121)||(5447868-5447969)
chr7 (26-104)||(15588660-15588738)
chr7 (33-127)||(15589801-15589895)
chr7 (156-216)||(15588804-15588865)
chr7 (156-216)||(15589939-15590000)
[»] chr3 (10 HSPs)
chr3 (20-217)||(38183105-38183320)
chr3 (23-127)||(17731069-17731173)
chr3 (23-127)||(19032300-19032404)
chr3 (30-104)||(49582643-49582716)
chr3 (22-127)||(1026812-1026917)
chr3 (57-122)||(21344718-21344783)
chr3 (22-127)||(3371421-3371530)
chr3 (159-216)||(3372278-3372336)
chr3 (174-216)||(16869912-16869955)
chr3 (22-63)||(3372378-3372419)
[»] chr6 (8 HSPs)
chr6 (20-216)||(14763828-14764042)
chr6 (23-127)||(21118714-21118818)
chr6 (23-127)||(21118432-21118536)
chr6 (22-218)||(14766407-14766621)
chr6 (22-127)||(32342098-32342203)
chr6 (29-122)||(20727499-20727592)
chr6 (132-200)||(20726694-20726761)
chr6 (156-214)||(32341995-32342055)
[»] chr4 (9 HSPs)
chr4 (22-127)||(14508741-14508846)
chr4 (22-119)||(10550018-10550115)
chr4 (22-121)||(31322595-31322694)
chr4 (22-104)||(41848346-41848428)
chr4 (153-216)||(10550136-10550200)
chr4 (84-126)||(45676681-45676723)
chr4 (151-216)||(45676765-45676830)
chr4 (39-122)||(31327221-31327304)
chr4 (164-211)||(41848503-41848551)
[»] chr2 (5 HSPs)
chr2 (25-122)||(4660113-4660209)
chr2 (22-127)||(20594632-20594737)
chr2 (22-131)||(31073683-31073794)
chr2 (156-216)||(31073833-31073894)
chr2 (57-129)||(34225049-34225121)


Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 20 - 387
Target Start/End: Complemental strand, 6138317 - 6137947
Alignment:
Q  20 acccacactctcacaaagcaaatatttaaactaaattagatataagcttaaagtgctactgatcggtgcatctaaaaacaaagaaactaggttcaatata 119  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||    
T  6138317 acccacactctcacaaagcaaatatttaaactaagtcagatataagcttaaagtgctactgactggtgcatcaaaaaacaaagaaactaggttcaatata 6138218  T
Q  120 tagtcttgatctaaacaaagcaatgtgggaca--atcaccaataattaattttttctaacctccttctttattcaagaaactt-acaatcaaacccaaca 216  Q
    |||||||| |||||||||||| |||||||| |  ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6138217 tagtcttggtctaaacaaagcgatgtgggatataatcaccaataactaattttttctaacctccttctttattcaagaaacttgacaatcaaacccaaca 6138118  T
Q  217 taatttggtacaagtgtgagtgagggtatcttccttccggtgatccttttagattcttccacaggacatgttgtttttgcaattggcaaatattcattca 316  Q
    ||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6138117 taatttgatacaagtgtgagtgagggtatattccttccagtgatccttttagattcttccacaggacatgttgtttctgcaattggcaaatattcattca 6138018  T
Q  317 ttcatcaaaaacacaactgcacaaacacactttcactatgcctattcctaagtcttgattagacgtctctg 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6138017 ttcatcaaaaacacaactgcacaaacacactttcactatgcctattcctaagtcttgattagacgtttctg 6137947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 6139938 - 6139724
Alignment:
Q  20 acccacactctcacaaagcaaatatttaaactaaattagatataagcttaaagtgctactgatcggtgcatctaaaaacaaagaaactaggttcaatata 119  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||| |||||||||||||||||||||||||| ||||||||||    
T  6139938 acccacactctcacaaagcaaatatttaaactaagttagatataagcttaaagtgttattgaccggtgcatctaaaaacaaagaaactatgttcaatata 6139839  T
Q  120 tagtcttgat---------------ctaaacaaagcaatgtgggac--aatcaccaataattaattttttctaacctccttctttattcaagaaactt-a 201  Q
    ||| |||| |               |||||| ||||  ||||| ||  ||||| |||||| |||||||||||||||||||||||||||||| |||||| |    
T  6139838 tagccttggtcttccccttgcttcactaaactaagcggtgtggaacataatcatcaataactaattttttctaacctccttctttattcaaaaaacttga 6139739  T
Q  202 caatcaaacccaaca 216  Q
    |||||||||||||||    
T  6139738 caatcaaacccaaca 6139724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 22 - 216
Target Start/End: Complemental strand, 52022244 - 52022033
Alignment:
Q  22 ccacactctcacaaagcaaatatttaaactaaattagatataagcttaaagtgctactgatcggtgcatctaaaaacaaagaaactaggttcaatatata 121  Q
    ||||||||||||||| |||||||||||||||| | |||||| |||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||    
T  52022244 ccacactctcacaaaacaaatatttaaactaagtcagatatgagcttaaagtgctaatgactggtgcatctaaaaacaaagaaactaggttcaatatata 52022145  T
Q  122 gtcttgat---------------ctaaacaaagcaatgtgggac--aatcaccaataattaattttttctaacctccttctttattcaagaaactt-aca 203  Q
    | |||| |               |||||| ||||||||||||||  |||||||||||| |||| |||| ||||||||||| ||||||||||||||| |||    
T  52022144 gccttggtcttccccttacttcactaaactaagcaatgtgggacataatcaccaataactaatatttt-taacctccttccttattcaagaaacttgaca 52022046  T
Q  204 atcaaacccaaca 216  Q
    |||||||||||||    
T  52022045 atcaaacccaaca 52022033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 5397459 - 5397360
Alignment:
Q  22 ccacactctcacaaagcaaatatttaaactaaattagatataagcttaaagtgctactgatcggtgcatctaaaaacaaagaaactaggttcaatatata 121  Q
    |||||||||||||||  ||||||||||| ||| |||||||||||||||||||| |||      |||||||||||||||||||| ||||||  ||||||||    
T  5397459 ccacactctcacaaaataaatatttaaattaagttagatataagcttaaagtgttac------gtgcatctaaaaacaaagaacctaggtctaatatata 5397366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 43835075 - 43834975
Alignment:
Q  22 ccacactctcacaaagcaaatatttaaactaaattagatataagcttaaagtgctactgatcggtgcatctaaaaacaaagaaactaggttcaatatata 121  Q
    ||||||| ||||||| ||||||||||||| || | |||| |||| |||||||||||||||  | ||||||| ||||| |||||  |||||||||||||||    
T  43835075 ccacactatcacaaaacaaatatttaaaccaagtcagatgtaagtttaaagtgctactgactgatgcatcttaaaactaagaacttaggttcaatatata 43834976  T
Q  122 g 122  Q
    |    
T  43834975 g 43834975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 117
Target Start/End: Complemental strand, 43835180 - 43835086
Alignment:
Q  22 ccacactctcacaaagcaaatatttaaactaaattagatataagcttaaagtgctactgatcggtgcatctaaaaacaaagaaactaggttcaata 117  Q
    |||||||||||||||||| |||||||||| || | ||||| ||||||||||| ||| |||| |||||||||  ||||| ||||  |||||||||||    
T  43835180 ccacactctcacaaagcagatatttaaaccaagtcagatacaagcttaaagttctaatgattggtgcatct-taaacagagaacttaggttcaata 43835086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 22 - 125
Target Start/End: Original strand, 2595305 - 2595406
Alignment:
Q  22 ccacactctcacaaagcaaatatttaaactaaattagatataagcttaaagtgctactgatcggtgcatctaaaaacaaagaaactaggttcaatatata 121  Q
    ||||| ||| ||||| |||||||||||||||| | | ||||||||| ||||  |||||||   |||||||||||||||||||| ||| ||  ||||||||    
T  2595305 ccacattcttacaaaacaaatatttaaactaagtcacatataagctcaaagcactactgac--gtgcatctaaaaacaaagaacctaagtctaatatata 2595402  T
Q  122 gtct 125  Q
    ||||    
T  2595403 gtct 2595406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 4e-48; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 35429905 - 35430119
Alignment:
Q  20 acccacactctcacaaagcaaatatttaaactaaattagatataagcttaaagtgctactgatcggtgcatctaaaaacaaagaaactaggttcaatata 119  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||    
T  35429905 acccacactctcacaaagcaaatatttaaactaagtcagatataagcttaaagtgctactgactggtgcttctaaaaacaaagaaactaggttcaatata 35430004  T
Q  120 tagtcttgat---------------ctaaacaaagcaatgtgggac--aatcaccaataattaattttttctaacctccttctttattcaagaaactt-a 201  Q
    |||||||| |               |||||  |||| |||| ||||  |||||||||||| |||| |||||||||||||||||||||||||||||||| |    
T  35430005 tagtcttggtcttccccttgcttcactaaaataagcgatgtcggacataatcaccaataactaatattttctaacctccttctttattcaagaaacttga 35430104  T
Q  202 caatcaaacccaaca 216  Q
    |||||||||||||||    
T  35430105 caatcaaacccaaca 35430119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 23 - 214
Target Start/End: Original strand, 7400470 - 7400678
Alignment:
Q  23 cacactctcacaaagcaaatatttaaactaaattagatataagcttaaagtgctactgatcggtgcatctaaaaacaaagaaactaggttcaatatatag 122  Q
    |||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  7400470 cacactctcacaaaacaaatatttaaactaagtcagatataagcttaaagtgctactgaccggtgcatctaaaaacaaagaacctaggttcaatatatag 7400569  T
Q  123 tcttgatct---------------aaacaaagcaatgtgggaca--atcaccaataattaattttttctaacctccttctttattcaagaaactt-acaa 204  Q
    ||||| |||               |||| |||| |||| |||||  ||||||||||| |||| |||| ||||||| ||||||||||||||||||| ||||    
T  7400570 tcttggtcttccccttgctccactaaactaagcgatgtcggacataatcaccaataactaatatttt-taacctctttctttattcaagaaacttgacaa 7400668  T
Q  205 tcaaacccaa 214  Q
    ||||||||||    
T  7400669 tcaaacccaa 7400678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 41341160 - 41341059
Alignment:
Q  20 acccacactctcacaaagcaaatatttaaactaaattagatataagcttaaagtgctactgatcggtgcatctaaaaacaaagaaactaggttcaatata 119  Q
    |||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||    
T  41341160 acccacactctcacaaagcaaacatttaaactaagtcagatataagcttaaagtgctactgactggtgcatctaaaaacaaagaaactaggtttaatata 41341061  T
Q  120 ta 121  Q
    ||    
T  41341060 ta 41341059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 35428322 - 35428432
Alignment:
Q  20 acccacactctcacaaagcaaatatttaaactaaattagatataagcttaaagtgctactgatcggtgcatctaaaaacaaagaa---actaggttcaat 116  Q
    |||||||  |||||||| |||||||||||||||| | |||||||||||||||||||||||||  |||||||||||||||||||||   ||||||||||||    
T  35428322 acccacaacctcacaaaacaaatatttaaactaagtcagatataagcttaaagtgctactgactggtgcatctaaaaacaaagaaattactaggttcaat 35428421  T
Q  117 atatagtcttg 127  Q
    |||||| ||||    
T  35428422 atatagccttg 35428432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 131
Target Start/End: Complemental strand, 18009313 - 18009206
Alignment:
Q  24 acactctcacaaagcaaatatttaaactaaattagatataagcttaaagtgctactgatcggtgcatctaaaaacaaagaaactaggttcaatatatagt 123  Q
    ||||| |||||||| ||||||||||||||| | | ||||||| |||||||||||||||  ||||||| ||||||||| ||| |||||| |||||||||      
T  18009313 acactttcacaaagaaaatatttaaactaagtcaaatataagtttaaagtgctactgactggtgcatttaaaaacaacgaatctaggtccaatatataac 18009214  T
Q  124 cttgatct 131  Q
    ||||||||    
T  18009213 cttgatct 18009206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 151 - 214
Target Start/End: Complemental strand, 13661691 - 13661627
Alignment:
Q  151 aatcaccaataattaattttttctaacctccttctttattcaagaaactt-acaatcaaacccaa 214  Q
    |||||| ||||| |||| |||| ||||||||||||||||||||||||||| ||||||||||||||    
T  13661691 aatcactaataactaatattttttaacctccttctttattcaagaaacttgacaatcaaacccaa 13661627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 30921621 - 30921676
Alignment:
Q  22 ccacactctcacaaagcaaatatttaaactaaattagatataagcttaaagtgcta 77  Q
    |||| |||||||||||||| |||||||||||| ||||||||||| |||||||||||    
T  30921621 ccacgctctcacaaagcaattatttaaactaacttagatataagtttaaagtgcta 30921676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 35428473 - 35428537
Alignment:
Q  151 aatcaccaataattaattttttctaacctccttctttattcaagaaactt-acaatcaaacccaaca 216  Q
    |||||||||||| |||| ||||||||||||||||||||||||  |||||| ||||||||||||||||    
T  35428473 aatcaccaataactaatattttctaacctccttctttattca--aaacttgacaatcaaacccaaca 35428537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 30921784 - 30921826
Alignment:
Q  174 taacctccttctttattcaagaaactt-acaatcaaacccaac 215  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  30921784 taacctccttctttattcaagaaacttgacaatcaaacccaac 30921826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 197
Target Start/End: Complemental strand, 41341035 - 41340966
Alignment:
Q  130 ctaaacaaagcaatgtgggaca--atcaccaataattaattttttctaacctccttctttattcaagaaa 197  Q
    |||||| |||| ||||||||||  | ||||||||| |||| |||| ||||||||||||||||||||||||    
T  41341035 ctaaactaagcgatgtgggacataaccaccaataactaatattttataacctccttctttattcaagaaa 41340966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 18009159 - 18009106
Alignment:
Q  164 taattttttctaacctccttctttattcaagaaactt-acaatcaaacccaaca 216  Q
    |||| |||| ||||||||||||||||| ||||||||| ||||||||||||||||    
T  18009159 taatattttttaacctccttctttatttaagaaacttgacaatcaaacccaaca 18009106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 59 - 122
Target Start/End: Complemental strand, 7659054 - 7658991
Alignment:
Q  59 atataagcttaaagtgctactgatcggtgcatctaaaaacaaagaaactaggttcaatatatag 122  Q
    ||||||||||||||||||||| |  ||| ||||| ||||||||||| |||  ||||||||||||    
T  7659054 atataagcttaaagtgctactaactggtacatctgaaaacaaagaacctaaattcaatatatag 7658991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 22 - 215
Target Start/End: Original strand, 392310 - 392521
Alignment:
Q  22 ccacactctcacaaagcaaatatttaaactaaattagatataagcttaaagtgctactgatcggtgcatctaaaaacaaagaaactaggttcaatatata 121  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |  | || |||||||||||||||||||| ||||||||||||    
T  392310 ccacactctcacaaagcaaatatttaaactaagtcagatataagcttaaagtgctactaactgatgtatctaaaaacaaagaaactacgttcaatatata 392409  T
Q  122 gtcttgat---------------ctaaacaaagcaatgtgggac--aatcaccaataattaattttttctaacctccttctttattcaagaaactt-aca 203  Q
    | |||| |               |||||| |||| |||||||||  |||||||||||| |||| |||||||||||||||||||||||||||||||| |||    
T  392410 gccttggtcttccccttgcttcactaaactaagcgatgtgggacataatcaccaataactaatattttctaacctccttctttattcaagaaacttgaca 392509  T
Q  204 atcaaacccaac 215  Q
    ||||||||||||    
T  392510 atcaaacccaac 392521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 7278058 - 7278156
Alignment:
Q  26 actctcacaaagcaaatatttaaactaaattagatataagcttaaagtgctactgatcggtgcatctaaaaacaaagaaactaggttcaatatatagtc 124  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||||||  |||||||||| |||||||||| |||||| ||||||||||||    
T  7278058 actctcacaaagcaaatatttaaactaagtcagatataagcttaaagtgctactgactggtgcatctacaaacaaagaacctaggtccaatatatagtc 7278156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 7284609 - 7284702
Alignment:
Q  25 cactctcacaaagcaaatatttaaactaaattagatataagcttaaagtgctactgatcggtgcatctaaaaacaaagaaa-ctaggttcaata 117  Q
    |||||||||||| |||||||||||||||| | ||||||||| |||||||| |||| || ||||| |||||||||||||||| |||||| |||||    
T  7284609 cactctcacaaaacaaatatttaaactaagtcagatataagtttaaagtggtactaattggtgcgtctaaaaacaaagaaatctaggtccaata 7284702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 3581381 - 3581326
Alignment:
Q  164 taattttttctaacctccttctttattcaagaaactt-acaatcaaacccaacata 218  Q
    |||| |||| ||||||||||||||||| ||||||||| ||||||||||| ||||||    
T  3581381 taatattttttaacctccttctttatttaagaaacttgacaatcaaacctaacata 3581326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 7278215 - 7278263
Alignment:
Q  169 ttttctaacctccttctttattcaagaaactt-acaatcaaacccaaca 216  Q
    |||| |||||||||| |||||| ||||||||| ||||||||||||||||    
T  7278215 ttttttaacctccttatttatttaagaaacttgacaatcaaacccaaca 7278263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 20 - 217
Target Start/End: Original strand, 5448861 - 5449076
Alignment:
Q  20 acccacactctcacaaagcaaatatttaaactaaattagatataagcttaaagtgctactgatcggtgcatctaaaaacaaagaaactaggttcaatata 119  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  5448861 acccacactctcacaaagaaaatatttaaactaagttagatataagcttaaagtgctactgactggtgcatctaaaaacaaagaaactaggttcaatata 5448960  T
Q  120 tagtcttgat---------------ctaaacaaagcaatgtgggaca--atcaccaataattaattttttctaacctccttctttattcaagaaactt-a 201  Q
    |||  ||| |               |||||| |||| |||||| |||  ||||||||||  |||| ||||||||| ||||| |||||||||||||||| |    
T  5448961 tagcattggtattccccttgcttcactaaactaagcgatgtggaacataatcaccaatagctaatattttctaacatccttttttattcaagaaacttga 5449060  T
Q  202 caatcaaacccaacat 217  Q
    ||||||||||||||||    
T  5449061 caatcaaacccaacat 5449076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 22 - 217
Target Start/End: Original strand, 5439853 - 5440066
Alignment:
Q  22 ccacactctcacaaagcaaatatttaaactaaattagatataagcttaaagtgctactgatcggtgcatctaaaaacaaagaaactaggttcaatatata 121  Q
    |||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||    
T  5439853 ccacactctcacaaagaaaatatttaaactgagttagatataagcttaaagtgctactgactggtgcatctaaaaacaaataaactaggttcaatatata 5439952  T
Q  122 gtcttgat---------------ctaaacaaagcaatgtgggaca--atcaccaataattaattttttctaacctccttctttattcaagaaactt-aca 203  Q
    |  ||| |               |||||| |||| |||||| |||  ||||||||||  |||| ||||||||| ||||| |||||||||||||||| |||    
T  5439953 gcattggtattccccttgcttcactaaactaagcgatgtggaacataatcaccaatagctaatattttctaacatccttttttattcaagaaacttgaca 5440052  T
Q  204 atcaaacccaacat 217  Q
    ||||||||||||||    
T  5440053 atcaaacccaacat 5440066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 5438858 - 5438959
Alignment:
Q  20 acccacactctcacaaagcaaatatttaaactaaattagatataagcttaaagtgctactgatcggtgcatctaaaaacaaagaaactaggttcaatata 119  Q
    ||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||| |||  ||||||||||||||||||||||||| ||||||||||    
T  5438858 acccacactctcacaaaacaaatatttaaactaagttatatataagcttaaagtgctattgactggtgcatctaaaaacaaagaaactatgttcaatata 5438957  T
Q  120 ta 121  Q
    ||    
T  5438958 ta 5438959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 5447868 - 5447969
Alignment:
Q  20 acccacactctcacaaagcaaatatttaaactaaattagatataagcttaaagtgctactgatcggtgcatctaaaaacaaagaaactaggttcaatata 119  Q
    ||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||| |||  ||||||||||| ||||||||||||| ||||||||||    
T  5447868 acccacactctcacaaaacaaatatttaaactaagttatatataagcttaaagtgctattgactggtgcatctaagaacaaagaaactatgttcaatata 5447967  T
Q  120 ta 121  Q
    ||    
T  5447968 ta 5447969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 26 - 104
Target Start/End: Original strand, 15588660 - 15588738
Alignment:
Q  26 actctcacaaagcaaatatttaaactaaattagatataagcttaaagtgctactgatcggtgcatctaaaaacaaagaa 104  Q
    ||||||||||| |||||||||||||||| | | |||||||||||| ||||||||||  |||||||||||||||||||||    
T  15588660 actctcacaaaacaaatatttaaactaagtcaaatataagcttaacgtgctactgacaggtgcatctaaaaacaaagaa 15588738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 15589801 - 15589895
Alignment:
Q  33 caaagcaaatatttaaactaaattagatataagcttaaagtgctactgatcggtgcatctaaaaacaaagaaactaggttcaatatatagtcttg 127  Q
    ||||||||||||| || |||| | |||||||||||||| |||||||||| | ||||||||||| |||||||| |||| |||||||||||| ||||    
T  15589801 caaagcaaatattgaacctaagtaagatataagcttaatgtgctactgacctgtgcatctaaatacaaagaacctagattcaatatatagccttg 15589895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 15588804 - 15588865
Alignment:
Q  156 ccaataattaattttttctaacctccttctttattcaagaaactt-acaatcaaacccaaca 216  Q
    ||||||| |||| |||| ||||||||||||||||||||||||||| ||||||| ||||||||    
T  15588804 ccaataactaatattttgtaacctccttctttattcaagaaacttgacaatcatacccaaca 15588865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 15589939 - 15590000
Alignment:
Q  156 ccaataattaattttttctaacctccttctttattcaagaaactt-acaatcaaacccaaca 216  Q
    ||||||| |||| |||| |||||||||||||||||||||||| || ||||||||||| ||||    
T  15589939 ccaataactaatattttttaacctccttctttattcaagaaatttgacaatcaaaccaaaca 15590000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 20 - 217
Target Start/End: Original strand, 38183105 - 38183320
Alignment:
Q  20 acccacactctcacaaagcaaatatttaaactaaattagatataagcttaaagtgctactgatcggtgcatctaaaaacaaagaaactaggttcaatata 119  Q
    ||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||    
T  38183105 acccacactctcacaaagcaaatatttaacctaagtcagatataagcttaaagtgctactgactggtgcatctaaaaacaaagaaactagattcaatata 38183204  T
Q  120 tagtcttgat---------------ctaaacaaagcaatgtgg--gacaatcaccaataattaattttttctaacctccttctttattcaagaaactt-a 201  Q
    ||| |||| |               |||||| |||| ||||||   | | |||||||||| |||| |||||||||||||||||||||||||||||||| |    
T  38183205 tagccttggtcttcaccttgcttcactaaactaagcgatgtggaatatagtcaccaataactaatattttctaacctccttctttattcaagaaacttga 38183304  T
Q  202 caatcaaacccaacat 217  Q
    ||||||||||||||||    
T  38183305 caatcaaacccaacat 38183320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 17731069 - 17731173
Alignment:
Q  23 cacactctcacaaagcaaatatttaaactaaattagatataagcttaaagtgctactgatcggtgcatctaaaaacaaagaaactaggttcaatatatag 122  Q
    |||||| |||||||| ||||||||||||||| | |||||||||||||||||||||||||  ||||||||||| || ||||||||||||||||||||||||    
T  17731069 cacactgtcacaaagaaaatatttaaactaagtcagatataagcttaaagtgctactgactggtgcatctaacaataaagaaactaggttcaatatatag 17731168  T
Q  123 tcttg 127  Q
     ||||    
T  17731169 ccttg 17731173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 19032300 - 19032404
Alignment:
Q  23 cacactctcacaaagcaaatatttaaactaaattagatataagcttaaagtgctactgatcggtgcatctaaaaacaaagaaactaggttcaatatatag 122  Q
    |||||| |||||||| ||||||||||||||| | |||||||||||||||||||||||||  ||||||||||| || ||||||||||||||||||||||||    
T  19032300 cacactgtcacaaagaaaatatttaaactaagtcagatataagcttaaagtgctactgactggtgcatctaacaataaagaaactaggttcaatatatag 19032399  T
Q  123 tcttg 127  Q
     ||||    
T  19032400 ccttg 19032404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 49582716 - 49582643
Alignment:
Q  30 tcacaaagcaaatatttaaactaaattagatataagcttaaagtgctactgatcggtgcatctaaaaacaaagaa 104  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||    |||||||||||||||||||    
T  49582716 tcacaaagcaaatatttaaactaagttagatataag-ttaaagtgctactgactaatgcatctaaaaacaaagaa 49582643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 1026917 - 1026812
Alignment:
Q  22 ccacactctcacaaagcaaatatttaaactaaattagatataagcttaaagtgctactgatcggtgcatctaaaaacaaagaaactaggttcaatatata 121  Q
    ||||||||||| |||| |||||||||||| ||   ||||||||||||| ||| ||| |||  ||||||||||||||||||||| ||| |||| |||||||    
T  1026917 ccacactctcagaaagaaaatatttaaacaaagacagatataagcttatagtactattgactggtgcatctaaaaacaaagaacctacgttcgatatata 1026818  T
Q  122 gtcttg 127  Q
    | ||||    
T  1026817 gccttg 1026812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 21344718 - 21344783
Alignment:
Q  57 agatataagcttaaagtgctactgatcggtgcatctaaaaacaaagaaactaggttcaatatatag 122  Q
    |||||||  ||||||||||||||||| |||||||||||||||||| || |||||||||||||||||    
T  21344718 agatatacacttaaagtgctactgattggtgcatctaaaaacaaataacctaggttcaatatatag 21344783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 3371530 - 3371421
Alignment:
Q  22 ccacactctcacaaagcaaatatttaaactaaattagatataa----gcttaaagtgctactgatcggtgcatctaaaaacaaagaaactaggttcaata 117  Q
    |||||||||||||||||||||||||||| ||| | ||||||||    | ||||||| ||| |||  | ||||||||||||||| ||| ||||||| ||||    
T  3371530 ccacactctcacaaagcaaatatttaaattaagtcagatataaataagtttaaagttctattgactgatgcatctaaaaacaaggaacctaggtttaata 3371431  T
Q  118 tatagtcttg 127  Q
    ||||| ||||    
T  3371430 tatagccttg 3371421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 3372336 - 3372278
Alignment:
Q  159 ataattaattttttctaacctccttctttattcaagaaactt-acaatcaaacccaaca 216  Q
    |||| |||| |||| ||||||||||||||||||||||||||| ||||||||| ||||||    
T  3372336 ataactaatattttttaacctccttctttattcaagaaacttgacaatcaaatccaaca 3372278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 16869912 - 16869955
Alignment:
Q  174 taacctccttctttattcaagaaactt-acaatcaaacccaaca 216  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||    
T  16869912 taacccccttctttattcaagaaacttaacaatcaaacccaaca 16869955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 3372419 - 3372378
Alignment:
Q  22 ccacactctcacaaagcaaatatttaaactaaattagatata 63  Q
    |||||||| ||||||||||||||||||||||| | |||||||    
T  3372419 ccacactcacacaaagcaaatatttaaactaagtcagatata 3372378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 14763828 - 14764042
Alignment:
Q  20 acccacactctcacaaagcaaatatttaaactaaattagatataagcttaaagtgctactgatcggtgcatctaaaaacaaagaaactaggttcaatata 119  Q
    |||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||  ||| |||||||||||||||||||||| ||||||| |    
T  14763828 acccacactctcacaaagcaaatatttaaactaagtcagatacaagcttaaagtgctactgactggtacatctaaaaacaaagaaactagattcaataaa 14763927  T
Q  120 tagtcttgat---------------ctaaacaaagcaatgtgggac--aatcaccaataattaattttttctaacctccttctttattcaagaaactt-a 201  Q
    |||  ||| |               |||||| |||| |||||||||  |||||||||||| |||| ||||||||||||||||||||||||| |||||| |    
T  14763928 tagctttggtcttccccttgcttcactaaactaagcgatgtgggacataatcaccaataactaatattttctaacctccttctttattcaacaaacttga 14764027  T
Q  202 caatcaaacccaaca 216  Q
    |||||||||||||||    
T  14764028 caatcaaacccaaca 14764042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 21118714 - 21118818
Alignment:
Q  23 cacactctcacaaagcaaatatttaaactaaattagatataagcttaaagtgctactgatcggtgcatctaaaaacaaagaaactaggttcaatatatag 122  Q
    |||||||||||||| | |||||||||||||| | |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  21118714 cacactctcacaaaactaatatttaaactaagtcagatataagcttaaagtgctactgactggtgcatctaaaaacaaagaaactaggttcaatatatag 21118813  T
Q  123 tcttg 127  Q
     ||||    
T  21118814 ccttg 21118818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 21118432 - 21118536
Alignment:
Q  23 cacactctcacaaagcaaatatttaaactaaattagatataagcttaaagtgctactgatcggtgcatctaaaaacaaagaaactaggttcaatatatag 122  Q
    |||||||||||||| | |||||||||||||| | ||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||    
T  21118432 cacactctcacaaaactaatatttaaactaagtcagatataagcttaaagtgctattgactggtgcatctaaaaacaaagaaactaggttcaatatatag 21118531  T
Q  123 tcttg 127  Q
     ||||    
T  21118532 ccttg 21118536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 22 - 218
Target Start/End: Original strand, 14766407 - 14766621
Alignment:
Q  22 ccacactctcacaaagcaaatatttaaactaaattagatataagcttaaagtgctactgatcggtgcatctaaaaacaaagaaactaggttcaatatata 121  Q
    |||||||||||||| ||||||||||||||||| | ||||| ||||||||||||||| |||   ||||||||||||||||| |||||||||||||||||||    
T  14766407 ccacactctcacaatgcaaatatttaaactaagtcagatacaagcttaaagtgctattgactagtgcatctaaaaacaaaaaaactaggttcaatatata 14766506  T
Q  122 gtcttgat---------------ctaaacaaagcaatgtgggac--aatcaccaataattaattttttctaacctccttctttattcaagaaactt-aca 203  Q
    | |||| |               |||||| |||  |||| ||||  |||||||||||| |||| ||||||||||||||| ||||||||| |||||| |||    
T  14766507 gccttggtcttctccttgcttcactaaactaagtgatgttggacataatcaccaataactaatattttctaacctccttgtttattcaacaaacttgaca 14766606  T
Q  204 atcaaacccaacata 218  Q
    |||||||||||||||    
T  14766607 atcaaacccaacata 14766621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 32342203 - 32342098
Alignment:
Q  22 ccacactctcacaaagcaaatatttaaactaaattagatataagcttaaagtgctactgatcggtgcatctaaaaacaaagaaactaggttcaatatata 121  Q
    ||||||||||||||| |||||||||||||||| | |||||||||||||||||| |||||| ||||||||||||||||||||||  ||  |||||||||||    
T  32342203 ccacactctcacaaaacaaatatttaaactaagtcagatataagcttaaagtgttactgaccggtgcatctaaaaacaaagaacttatattcaatatata 32342104  T
Q  122 gtcttg 127  Q
    | ||||    
T  32342103 gccttg 32342098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 29 - 122
Target Start/End: Complemental strand, 20727592 - 20727499
Alignment:
Q  29 ctcacaaagcaaatatttaaactaaattagatataagcttaaagtgctactgatcggtgcatctaaaaacaaagaaactaggttcaatatatag 122  Q
    ||||||||| |||||||||| |||| | |||||||||| |||||||||| ||||  ||||||||||||||||||||  ||||||||||||||||    
T  20727592 ctcacaaagaaaatatttaatctaagtcagatataagcataaagtgctattgattagtgcatctaaaaacaaagaacataggttcaatatatag 20727499  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 132 - 200
Target Start/End: Complemental strand, 20726761 - 20726694
Alignment:
Q  132 aaacaaagcaatgtgggacaatcaccaataattaattttttctaacctccttctttattcaagaaactt 200  Q
    |||| ||||||||||||||| ||  |||||| |||| |||| |||||||||||||||||||||||||||    
T  20726761 aaactaagcaatgtgggaca-tcttcaataactaatattttttaacctccttctttattcaagaaactt 20726694  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 32342055 - 32341995
Alignment:
Q  156 ccaataattaattttttctaacctccttctttattc-aagaaactt-acaatcaaacccaa 214  Q
    |||||||||||| |||| ||||||| |||||||||| ||||||||| ||||||||| ||||    
T  32342055 ccaataattaatattttttaacctctttctttattcaaagaaacttgacaatcaaatccaa 32341995  T

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Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 14508846 - 14508741
Alignment:
Q  22 ccacactctcacaaagcaaatatttaaactaaattagatataagcttaaagtgctactgatcggtgcatctaaaaacaaagaaactaggttcaatatata 121  Q
    |||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||  ||| ||||||||||| ||||| ||||||||||||||||    
T  14508846 ccacactctcacaaagcaaatatttaaactaggtcagatataagcttaaagtgctactgactggtacatctaaaaactaagaacctaggttcaatatata 14508747  T
Q  122 gtcttg 127  Q
    | ||||    
T  14508746 gccttg 14508741  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 10550018 - 10550115
Alignment:
Q  22 ccacactctcacaaagcaaatatttaaactaaattagatataagcttaaagtgctactgatcggtgcatctaaaaacaaagaaactaggttcaatata 119  Q
    ||||||||||||||| |||||||||||||| | | |||||||| ||||||||||||||||  ||||||||||||||||||||| ||||||||||||||    
T  10550018 ccacactctcacaaaacaaatatttaaactgagtcagatataaacttaaagtgctactgactggtgcatctaaaaacaaagaacctaggttcaatata 10550115  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 31322694 - 31322595
Alignment:
Q  22 ccacactctcacaaagcaaatatttaaactaaattagatataagcttaaagtgctactgatcggtgcatctaaaaacaaagaaactaggttcaatatata 121  Q
    |||| ||| ||||||| ||||||||||||||| | ||||||||||||||||||| | |||  ||||||||||||||||||||| |||||| |||||||||    
T  31322694 ccactctcccacaaagaaaatatttaaactaagtcagatataagcttaaagtgccattgaatggtgcatctaaaaacaaagaacctaggtccaatatata 31322595  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 41848346 - 41848428
Alignment:
Q  22 ccacactctcacaaagcaaatatttaaactaaattagatataagcttaaagtgctactgatcggtgcatctaaaaacaaagaa 104  Q
    ||||||| ||| ||| |||||||||||||||||| ||||||||||| ||| |||||||||  | |||||||||||||||||||    
T  41848346 ccacactttcataaaacaaatatttaaactaaatcagatataagctaaaaatgctactgactgatgcatctaaaaacaaagaa 41848428  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 153 - 216
Target Start/End: Original strand, 10550136 - 10550200
Alignment:
Q  153 tcaccaataattaattttttctaacctccttctttattcaagaaactt-acaatcaaacccaaca 216  Q
    |||||||||| |||| |||| ||||||| ||||||||||||||||||| ||||||||||||||||    
T  10550136 tcaccaataactaatgttttttaacctcattctttattcaagaaacttgacaatcaaacccaaca 10550200  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 84 - 126
Target Start/End: Original strand, 45676681 - 45676723
Alignment:
Q  84 ggtgcatctaaaaacaaagaaactaggttcaatatatagtctt 126  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  45676681 ggtgcatctaaaaacaaagaacctaggttcaatatatagtctt 45676723  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 45676765 - 45676830
Alignment:
Q  151 aatcaccaataattaattttttctaacctccttctttattcaagaaactt-acaatcaaacccaaca 216  Q
    |||||||||||  |||| |||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  45676765 aatcaccaatagctaatatttt-taacctccttctttattcaagaaacttgacaatcaaacccaaca 45676830  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 31327304 - 31327221
Alignment:
Q  39 aaatatttaaactaaattagatataagcttaaagtgctactgatcggtgcatctaaaaacaaagaaactaggttcaatatatag 122  Q
    ||||||||||| ||| | |||||||| |||||||||||||| |  |||| || |||||| | |||| ||||||| |||||||||    
T  31327304 aaatatttaaattaagtcagatataaacttaaagtgctacttactggtgtatataaaaatagagaacctaggttgaatatatag 31327221  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 41848503 - 41848551
Alignment:
Q  164 taattttttctaacctccttctttattcaagaaactt-acaatcaaacc 211  Q
    |||| |||| ||||||||||||||||| ||||||||| |||||||||||    
T  41848503 taatattttttaacctccttctttatttaagaaacttaacaatcaaacc 41848551  T

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Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 25 - 122
Target Start/End: Original strand, 4660113 - 4660209
Alignment:
Q  25 cactctcacaaagcaaatatttaaactaaattagatataagcttaaagtgctactgatcggtgcatctaaaaacaaagaaactaggttcaatatatag 122  Q
    |||||||||||| |||||||||||||||| | |||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  4660113 cactctcacaaaccaaatatttaaactaagtcagatataatcttaaagtgctactgaccggtgcatc-aaaaacaaagaaactaggttcaatatatag 4660209  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 20594737 - 20594632
Alignment:
Q  22 ccacactctcacaaagcaaatatttaaactaaattagatataagcttaaagtgctactgatcggtgcatctaaaaacaaagaaactaggttcaatatata 121  Q
    ||||||||||||||| |||||||||||||||  | ||||||||||||| |||| || ||| ||||||||||||||| |||||| ||||||||||||||||    
T  20594737 ccacactctcacaaaacaaatatttaaactatgtcagatataagcttagagtgttattgaccggtgcatctaaaaataaagaacctaggttcaatatata 20594638  T
Q  122 gtcttg 127  Q
    ||||||    
T  20594637 gtcttg 20594632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 31073683 - 31073794
Alignment:
Q  22 ccacactctcacaaagcaaatatttaaactaaattagatataagcttaaagtgctactgatcggtgcatctaaaaa--caaagaaactaggttcaatata 119  Q
    |||||| |||||||| |||||||||||||||| ||||||||||| ||||| |||||||||  | ||||  |||| |   |||||| ||||||||||||||    
T  31073683 ccacaccctcacaaaacaaatatttaaactaagttagatataagtttaaaatgctactgactgttgcagttaaatatttaaagaacctaggttcaatata 31073782  T
Q  120 tagtcttgatct 131  Q
    |||  |||||||    
T  31073783 tagcattgatct 31073794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 31073833 - 31073894
Alignment:
Q  156 ccaataattaattttttctaacctccttctttattcaagaaactt-acaatcaaacccaaca 216  Q
    ||||||| |||| |||| | ||||||||||||||||||||||||| ||||||||||||||||    
T  31073833 ccaataactaatattttttcacctccttctttattcaagaaacttgacaatcaaacccaaca 31073894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 34225049 - 34225121
Alignment:
Q  57 agatataagcttaaagtgctactgatcggtgcatctaaaaacaaagaaactaggttcaatatatagtcttgat 129  Q
    ||||||||  |||||||| ||  |||||||||||||||||||||||||  |||||| |||||||||| |||||    
T  34225049 agatataaatttaaagtgttatagatcggtgcatctaaaaacaaagaatttaggtttaatatatagttttgat 34225121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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