View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19210_low_21 (Length: 366)
Name: NF19210_low_21
Description: NF19210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19210_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 204 - 354
Target Start/End: Complemental strand, 3769760 - 3769607
Alignment:
| Q |
204 |
ttttttcttcctaaatgtgggtgttgtacgagaatgatacttcaagttgatttgtttcattatcattgttataaaattgtacaataacattagtttgata |
303 |
Q |
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| T |
3769760 |
ttttttcttcctaaatgtgggtgttgtacgagaatgatacttcaagttggtttgttttattataattattataaaattgtacaataacattagtttgata |
3769661 |
T |
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| Q |
304 |
tgaaactgaa---tatgatgtatgtgaaactacattttaaagtgagatatgttc |
354 |
Q |
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| T |
3769660 |
tgaaattgaatattatgatgtatgtgaaactacattttaaagtgagatatgttc |
3769607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 3777716 - 3777657
Alignment:
| Q |
16 |
gattagagatctaatgatgggtgaagaacgaagtgagattcgacaaagaatggaagatct |
75 |
Q |
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| T |
3777716 |
gattagagatctaatgataggtgaagaacgaagtgagattcgacaaagaattgaagatct |
3777657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 266
Target Start/End: Complemental strand, 3777536 - 3777442
Alignment:
| Q |
175 |
ctgtgagtttatttcaatgtgtttaatac---ttttttcttcctaaatgtgggtgttgtacgagaatgatacttcaagttgatttgtttcattat |
266 |
Q |
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| T |
3777536 |
ctgtgagtttatttcaatgtgtttattacattttttttcttccttaatgttgatgttgcaccacaatgatacttgaagttggtttgttttattat |
3777442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 3701388 - 3701438
Alignment:
| Q |
22 |
agatctaatgatgggtgaagaacgaagtgagattcgacaaagaatggaaga |
72 |
Q |
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| T |
3701388 |
agatctaatgctcggagaagaacgaagtgagattcgacaaagaattgaaga |
3701438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 3708151 - 3708205
Alignment:
| Q |
18 |
ttagagatctaatgatgggtgaagaacgaagtgagattcgacaaagaatggaaga |
72 |
Q |
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| T |
3708151 |
ttagacatctaatgctcggagaagaacggagtgagattcgacaaagaattgaaga |
3708205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 3770040 - 3769990
Alignment:
| Q |
22 |
agatctaatgatgggtgaagaacgaagtgagattcgacaaagaatggaaga |
72 |
Q |
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| T |
3770040 |
agatctaatgctcggagaagaacggagtgagattcgacaaagaattgaaga |
3769990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 3719665 - 3719714
Alignment:
| Q |
23 |
gatctaatgatgggtgaagaacgaagtgagattcgacaaagaatggaaga |
72 |
Q |
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| T |
3719665 |
gatctaatgctcggagaaaaacggagtgagattcgacaaagaatggaaga |
3719714 |
T |
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