View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19210_low_22 (Length: 355)
Name: NF19210_low_22
Description: NF19210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19210_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 344
Target Start/End: Original strand, 43633956 - 43634288
Alignment:
| Q |
19 |
acattgggaaagaaaataagaaagtttatctcaagtaatttgaaatttccaagagtttagaattataaacaattgaattgacgcagtgaataaactacac |
118 |
Q |
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| T |
43633956 |
acattggaaaagaaaataagaaagtttatctcaagtaatttgaaatttccaagagtttagaattatatacaattgaattgacg-agtgaataaactccac |
43634054 |
T |
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| Q |
119 |
caaaagataaattttttgagaaaatctaaatttgtttttt--gagtctgaacaatttttaggttaaaacacgtatctaacagtgttcgttctttatctct |
216 |
Q |
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| T |
43634055 |
caaaagataaattctttgagtaaatctaaatttgttttttttgagtttgaacaatttttagattaaaatatgtatctaacactgttcgttctttatctct |
43634154 |
T |
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| Q |
217 |
tatcatcatctacttttcatatccatcattactctatcttagaagaatcgtatgaaaaaatataagtttgattcctgagtatgaacaatttttatgttga |
316 |
Q |
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| T |
43634155 |
tatcatcatctacttttcatatccatcattattctatcttagaagaatcgtatgaaaaaatataagtttgacttctaagtatgaacaatttttatgttga |
43634254 |
T |
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| Q |
317 |
aaca------cacatctaacatccttcgatctct |
344 |
Q |
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|||| |||||||||||||||||||||||| |
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| T |
43634255 |
aacacacatgcacatctaacatccttcgatctct |
43634288 |
T |
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