View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19210_low_23 (Length: 344)
Name: NF19210_low_23
Description: NF19210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19210_low_23 |
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| [»] scaffold1944 (1 HSPs) |
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| [»] scaffold1790 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 11587429 - 11587753
Alignment:
| Q |
1 |
ttggggtctcaaaagctagatctttatcaatacaaatgatggattcaatctctatgacttccatattagctgcagaaaccaacatcttttgcacattcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11587429 |
ttggggtctcaaaagctagatctttatcaatacaaatgatggattcaatctctatgacttccatattagctgcagaaaccaacatcttttgcacattcat |
11587528 |
T |
|
| Q |
101 |
atgcaaaattttaaaatatttgagacttgaactatcaatgttaacttcatcttcagagaaatcacagttattaagtgtgaggttttcaagagatgaacag |
200 |
Q |
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| T |
11587529 |
atccaaaattttaaaatatttgagacttgaactatcaatgttaacttcatctccagagaaatcacagttattaagtgtgaggttttcaagagatgaacaa |
11587628 |
T |
|
| Q |
201 |
tgagaaataatctcttgaaaattgcttgatgaaacacacacttgattgagggtaagagttttcaaaacctggttgagatcatgggaaggtgtagttataa |
300 |
Q |
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| T |
11587629 |
tgagaaataatctcttgaaaattgtttgatgaaacacacacttgattgagggtaagagttttcaaaacctggttgagatcaagggaaggtgtagttataa |
11587728 |
T |
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| Q |
301 |
aacaataatgattcaactcaagaac |
325 |
Q |
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| T |
11587729 |
aacaataatgattcaactcaagaac |
11587753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 30372562 - 30372358
Alignment:
| Q |
1 |
ttggggtctcaaaagctagatctttatcaatacaaatgatggattcaatctctatgacttccatattagctgcagaaaccaacatcttttgcacattcat |
100 |
Q |
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|||||||||| ||| |||||||| || | ||| || |||| | ||||||| || ||||| || |||| |||||||| ||||||||| ||||| |||| |
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| T |
30372562 |
ttggggtctcgaaaattagatcttcattataacatataatggttccaatctcaatcacttcaattttagttgcagaaatcaacatcttatgcacggtcat |
30372463 |
T |
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| Q |
101 |
atgcaaaattttaaaatatttgagacttgaactatcaatgttaacttcatcttcagagaaatcacagttattaagtgtgaggttttcaagagatgaacag |
200 |
Q |
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|| |||| |||||||||||||||||||| |||||||| || || ||||| || | |||| ||| || ||||| ||||| |||||||| || ||||| |
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| T |
30372462 |
atcaaaaaatttaaaatatttgagacttgggctatcaatcttgaccccatctccaaataaattacattttttaagggtgagattttcaagtgacgaacat |
30372363 |
T |
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| Q |
201 |
tgaga |
205 |
Q |
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||||| |
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| T |
30372362 |
tgaga |
30372358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 201
Target Start/End: Original strand, 29787464 - 29787634
Alignment:
| Q |
31 |
tacaaatgatggattcaatctctatgacttccatattagctgcagaaaccaacatcttttgcacattcatatgcaaaattttaaaatatttgagacttga |
130 |
Q |
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||||||| ||||| ||||||||||||||||| | |||| |||||||| ||| ||| | |||||||||| | ||||||||| |||||| ||||||| |
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| T |
29787464 |
tacaaataatggagtcaatctctatgacttcaacattaaatgcagaaatcaaaatcctaagcacattcatcttacaaattttaatatatttcagacttgg |
29787563 |
T |
|
| Q |
131 |
actatcaatgttaacttcatcttcagagaaatcacagttattaagtgtgaggttttcaagagatgaacagt |
201 |
Q |
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||| |||| |||| ||||||| ||||||||||||| | | || |||||||||||||||||||||| |
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| T |
29787564 |
acttacaatcttaagttcatctcttaagaaatcacagttctcgacggtaaggttttcaagagatgaacagt |
29787634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 53 - 145
Target Start/End: Complemental strand, 30376226 - 30376134
Alignment:
| Q |
53 |
tatgacttccatattagctgcagaaaccaacatcttttgcacattcatatgcaaaattttaaaatatttgagacttgaactatcaatgttaac |
145 |
Q |
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||||||||| || || | || ||||||||| |||||||||||| |||| | |||| |||||||||||| ||||||| ||||||||| ||||| |
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| T |
30376226 |
tatgacttcaatgttggatgtagaaaccaaaatcttttgcacaatcattttaaaaaatttaaaatattttagacttggactatcaattttaac |
30376134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 145
Target Start/End: Complemental strand, 30379397 - 30379256
Alignment:
| Q |
4 |
gggtctcaaaagctagatctttatcaatacaaatgatggattcaatctctatgacttccatattagctgcagaaaccaacatcttttgcacattcatatg |
103 |
Q |
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||||||||||| | |||||||| | ||||||| ||| | |||||| ||||||||| || || | || |||||||| |||||||||||| |||| | |
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| T |
30379397 |
gggtctcaaaaaacaaatctttatgattacaaataatgaagccaatctttatgacttcaatgttggatgtggaaaccaaaatcttttgcacaatcatttt |
30379298 |
T |
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| Q |
104 |
caaaattttaaaatatttgagacttgaactatcaatgttaac |
145 |
Q |
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| T |
30379297 |
aaaaaatttaaaatattttatacttagactatcaatcttaac |
30379256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 29856350 - 29856286
Alignment:
| Q |
18 |
agatctttatcaatacaaatgatggattcaatctctatgacttccatattagctgcagaaaccaa |
82 |
Q |
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| T |
29856350 |
agatcttcatgattacaaataacggagtcaatctctatgacttccatgttaaatgcagaaaccaa |
29856286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1944 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold1944
Description:
Target: scaffold1944; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 47 - 145
Target Start/End: Original strand, 405 - 503
Alignment:
| Q |
47 |
aatctctatgacttccatattagctgcagaaaccaacatcttttgcacattcatatgcaaaattttaaaatatttgagacttgaactatcaatgttaac |
145 |
Q |
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||||| ||||||||| || || | || ||||||||| |||||||||||| |||| | |||| |||||||||||| ||||||| ||||||||| ||||| |
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| T |
405 |
aatctttatgacttcaatgttggatgtagaaaccaaaatcttttgcacaatcattttaaaaaatttaaaatattttagacttggactatcaattttaac |
503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1790 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold1790
Description:
Target: scaffold1790; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 47 - 145
Target Start/End: Original strand, 546 - 644
Alignment:
| Q |
47 |
aatctctatgacttccatattagctgcagaaaccaacatcttttgcacattcatatgcaaaattttaaaatatttgagacttgaactatcaatgttaac |
145 |
Q |
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||||| ||||||||| || || | || ||||||||| |||||||||||| |||| | |||| |||||||||||| ||||||| ||||||||| ||||| |
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| T |
546 |
aatctttatgacttcaatgttggatgtagaaaccaaaatcttttgcacaatcattttaaaaaatttaaaatattttagacttggactatcaattttaac |
644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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