View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19210_low_24 (Length: 341)
Name: NF19210_low_24
Description: NF19210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19210_low_24 |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0807 (1 HSPs) |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 13 - 341
Target Start/End: Complemental strand, 26915426 - 26915098
Alignment:
| Q |
13 |
gggagcgtttatgtgtttaggcggtttatccaaaagggatcgatttatgatgtttgttttatgaacttctacactttggtcaatttaaaaagaacataat |
112 |
Q |
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| T |
26915426 |
gggagcatttatgtgcttaggcggtttctccaaaagggatcgatttatgatgtttgttttatgaacttctacagtttggtcaatttaaaaagaacataat |
26915327 |
T |
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| Q |
113 |
ggttgaatttttaagcaaaaggtggattcaatacaaattttacttgagagaattaagcttcaaatgtattggtggttgaaatcaaaacatgctatctttg |
212 |
Q |
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| T |
26915326 |
ggttgaatttttaagcaaaaggtggattcaatacaaattttacttgagagaattaagcttcaaatgtattggtggttgaaatcaaaacatgctatctttg |
26915227 |
T |
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| Q |
213 |
attttgattatcagctttgaaggttgaatcctcgtcattgtttgatatttgtaatttagcttttgctcggggcttttatgttgactaacagattgtaatt |
312 |
Q |
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| T |
26915226 |
attttgattatcagctttgaaggttgaatcctcgtcattgtttgatatttgtaatttagcttttgcttggggcttttatgttgactaactgattgtaatt |
26915127 |
T |
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| Q |
313 |
ttggataatttctctgacacaacttgtgt |
341 |
Q |
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| T |
26915126 |
ttgggtaatttctctgacacaacttgtgt |
26915098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 56 - 279
Target Start/End: Original strand, 6095547 - 6095768
Alignment:
| Q |
56 |
tttatgatgtttgttttatgaacttctacactttggtcaatttaaaaagaacataatggttgaatttttaagcaaaaggtggattcaatacaaattttac |
155 |
Q |
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| T |
6095547 |
tttatgatgtctgttttatgtgcttttacagtttggtctatttgaaaagaacgtaatggtcaaattttccagcaaaaggtggaatcaacgcaaactttac |
6095646 |
T |
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| Q |
156 |
ttgagagaattaagcttcaaatgtattggtggttgaaatcaaaacatgctatctttgattttgattatcagctttgaaggttgaatcctcgtcattgttt |
255 |
Q |
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| T |
6095647 |
ttgagagaattaagcttcaaat--aatggtggttgaaatcaaaacatgttacctttgattttgattatcagttttggaggtttaatccccgtctttgttt |
6095744 |
T |
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| Q |
256 |
gatatttgtaatttagcttttgct |
279 |
Q |
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||| |||||||||||||||||||| |
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| T |
6095745 |
gatgtttgtaatttagcttttgct |
6095768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0807 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold0807
Description:
Target: scaffold0807; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 28 - 277
Target Start/End: Complemental strand, 5120 - 4871
Alignment:
| Q |
28 |
tttaggcggtttatccaaaagggatcgatttatgatgtttgttttatgaacttctacactttggtcaatttaaaaagaacataatggttgaatttttaag |
127 |
Q |
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| T |
5120 |
tttaggtggtttctctaaaagagatcaacttaggatgtctattttatgggcatctacagtttggtatatttggaaagaatgtaatggtcgaattttagag |
5021 |
T |
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| Q |
128 |
caaaaggtggattcaatacaaattttacttgagagaattaagcttcaaatgtattggtggttgaaatcaaaacatgctatctttgattttgattatcagc |
227 |
Q |
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| T |
5020 |
caaaaggtggattgtacgcaaactttacatgaaagaatcaaacttcaaacttattggtggttgaaatcaaaactcgctactttttattttgattatcagg |
4921 |
T |
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| Q |
228 |
tttgaaggttgaatcctcgtcattgtttgatatttgtaatttagcttttg |
277 |
Q |
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|||| |||||||| | ||||||||||||||| | |||||||||||||||| |
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| T |
4920 |
tttggaggttgaaacatcgtcattgtttgatgtatgtaatttagcttttg |
4871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 25587069 - 25586991
Alignment:
| Q |
154 |
acttgagagaattaagcttcaaatgtattggtggttgaaatcaaaacatgctatctttgattttgattatcagctttga |
232 |
Q |
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| T |
25587069 |
acttgagagaatttaccttcaaatatattggtggttgaaatcaaaacatgctacttttgattttgattatcagttttga |
25586991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 191 - 256
Target Start/End: Original strand, 16585195 - 16585260
Alignment:
| Q |
191 |
aaatcaaaacatgctatctttgattttgattatcagctttgaaggttgaatcctcgtcattgtttg |
256 |
Q |
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| T |
16585195 |
aaatcaaaacacgctacctttgattttgattatcagttttggaggttgaattctcatcattgtttg |
16585260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 19337415 - 19337371
Alignment:
| Q |
181 |
ttggtggttgaaatcaaaacatgctatctttgattttgattatca |
225 |
Q |
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| T |
19337415 |
ttggtggttgaaatcaaaatatgctatttttgattttgattatca |
19337371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 232
Target Start/End: Original strand, 60672 - 60758
Alignment:
| Q |
146 |
caaattttacttgagagaattaagcttcaaatgtattggtggttgaaatcaaaacatgctatctttgattttgattatcagctttga |
232 |
Q |
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| T |
60672 |
caaactttaattgagaagatcaagcttcaaatttattggtggttgaaatcaaaataagctacttttaattttgagtaccagttttga |
60758 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 41768580 - 41768624
Alignment:
| Q |
181 |
ttggtggttgaaatcaaaacatgctatctttgattttgattatca |
225 |
Q |
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| T |
41768580 |
ttggtggttgaaatcgaaatatgctaattttgattttgattatca |
41768624 |
T |
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