View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19210_low_25 (Length: 330)

Name: NF19210_low_25
Description: NF19210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19210_low_25
NF19210_low_25
[»] chr5 (7 HSPs)
chr5 (85-315)||(2357362-2357592)
chr5 (237-315)||(43095276-43095354)
chr5 (237-315)||(9503861-9503939)
chr5 (237-315)||(9507843-9507921)
chr5 (237-315)||(34854270-34854348)
chr5 (236-313)||(3627703-3627780)
chr5 (237-315)||(32090416-32090494)
[»] chr3 (5 HSPs)
chr3 (237-315)||(27237800-27237878)
chr3 (237-315)||(55418598-55418676)
chr3 (237-313)||(47744033-47744109)
chr3 (241-315)||(32813783-32813857)
chr3 (260-315)||(531396-531451)
[»] chr1 (2 HSPs)
chr1 (238-315)||(10917093-10917170)
chr1 (237-287)||(3709511-3709561)
[»] chr2 (11 HSPs)
chr2 (237-313)||(5983644-5983720)
chr2 (236-315)||(5989599-5989678)
chr2 (237-314)||(4285246-4285323)
chr2 (238-313)||(1645222-1645297)
chr2 (237-315)||(13273495-13273573)
chr2 (237-313)||(21794333-21794409)
chr2 (237-315)||(45485631-45485709)
chr2 (237-315)||(45496896-45496974)
chr2 (237-315)||(45504638-45504716)
chr2 (236-315)||(43081476-43081555)
chr2 (257-302)||(31468927-31468972)
[»] chr8 (2 HSPs)
chr8 (237-315)||(14685508-14685586)
chr8 (237-312)||(11096340-11096415)
[»] chr6 (4 HSPs)
chr6 (237-315)||(367160-367238)
chr6 (233-315)||(7534343-7534425)
chr6 (237-315)||(7501212-7501290)
chr6 (236-305)||(31888714-31888783)
[»] scaffold0014 (1 HSPs)
scaffold0014 (237-302)||(34602-34667)
[»] chr4 (4 HSPs)
chr4 (237-313)||(53008480-53008556)
chr4 (236-315)||(53011372-53011451)
chr4 (243-313)||(28571346-28571416)
chr4 (237-282)||(56563268-56563313)
[»] chr7 (3 HSPs)
chr7 (259-315)||(35323886-35323942)
chr7 (237-315)||(22582180-22582258)
chr7 (237-315)||(35703417-35703495)


Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 85 - 315
Target Start/End: Original strand, 2357362 - 2357592
Alignment:
Q  85 aagaaatggcaaacatcatacgaaacacataaccataagattttagattcaaactcagttagatatgtccaacataacataaatattagcattgttagtt 184  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  2357362 aagaaatggcaaacatcatacgaaacacataaccgtaagattttagattcaaactcagttagagatgtccaacataacataaatattaacattgttagtt 2357461  T
Q  185 gagaattttatttagatacaactgatagttctgaattatttgttgtaaatcatgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgt 284  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||    
T  2357462 gagaattttatttagatacaattgatagttctgaattatttgttgtaaatcatgatggaacaatgtatgaaaattgaatgaaactaacacttaaaactgt 2357561  T
Q  285 gttcaattgacgaagatggaattaagattct 315  Q
    |||||||||| |||||||| ||||| |||||    
T  2357562 gttcaattgaagaagatgggattaaaattct 2357592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 237 - 315
Target Start/End: Complemental strand, 43095354 - 43095276
Alignment:
Q  237 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttcaattgacgaagatggaattaagattct 315  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||| ||||| |||||||    
T  43095354 tgatggaacaatgtatgaaaattgaatgaaaccaacacttaaaactgtgttcaattgaagaagattgaattgagattct 43095276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 237 - 315
Target Start/End: Complemental strand, 9503939 - 9503861
Alignment:
Q  237 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttcaattgacgaagatggaattaagattct 315  Q
    |||||||||||||||| ||| | ||||||||||| ||||||||| || |||||||||| |||||||||||| |||||||    
T  9503939 tgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatggaattgagattct 9503861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 237 - 315
Target Start/End: Complemental strand, 9507921 - 9507843
Alignment:
Q  237 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttcaattgacgaagatggaattaagattct 315  Q
    ||||| |||||||||| ||| | ||||||||||||||||||||| || |||||||||| |||||||||||| |||||||    
T  9507921 tgatgtaacaatgtatgaaattagaatgaaaccaacacttaaaactgagttcaattgaagaagatggaattgagattct 9507843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 237 - 315
Target Start/End: Complemental strand, 34854348 - 34854270
Alignment:
Q  237 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttcaattgacgaagatggaattaagattct 315  Q
    |||||||||||||||| ||| | ||||||||||| ||||||||| | ||||||||||| |||||||||||| |||||||    
T  34854348 tgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactatgttcaattgaagaagatggaattgagattct 34854270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 236 - 313
Target Start/End: Complemental strand, 3627780 - 3627703
Alignment:
Q  236 atgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttcaattgacgaagatggaattaagatt 313  Q
    ||||||||||||||||| ||| | ||||||||||| ||||||||| ||||||||||||| ||||||| |||| |||||    
T  3627780 atgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgtgttcaattgaagaagatgaaattgagatt 3627703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 315
Target Start/End: Complemental strand, 32090494 - 32090416
Alignment:
Q  237 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttcaattgacgaagatggaattaagattct 315  Q
    ||||||||||||| || ||| | ||||||||||| ||||||||| || |||||||||| |||||||||||| |||||||    
T  32090494 tgatggaacaatgaatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatggaattgagattct 32090416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 237 - 315
Target Start/End: Complemental strand, 27237878 - 27237800
Alignment:
Q  237 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttcaattgacgaagatggaattaagattct 315  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||    
T  27237878 tgatgcaacaatgtataaaaattgaatgaaaccaacacttaaaactgtgttcaattgaagaagatggaattgagattct 27237800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 237 - 315
Target Start/End: Complemental strand, 55418676 - 55418598
Alignment:
Q  237 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttcaattgacgaagatggaattaagattct 315  Q
    |||||||||||||||| ||| | ||||||||||   |||||||||||||||||||||| |||||||||||| |||||||    
T  55418676 tgatggaacaatgtatgaaattagaatgaaaccggtacttaaaattgtgttcaattgaagaagatggaattgagattct 55418598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 237 - 313
Target Start/End: Complemental strand, 47744109 - 47744033
Alignment:
Q  237 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttcaattgacgaagatggaattaagatt 313  Q
    |||||||| ||||||| ||| | ||||||||||||||||||||| ||||||||||| | |||||||||||| |||||    
T  47744109 tgatggaaaaatgtatgaaattagaatgaaaccaacacttaaaactgtgttcaattaaagaagatggaattgagatt 47744033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 315
Target Start/End: Complemental strand, 32813857 - 32813783
Alignment:
Q  241 ggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttcaattgacgaagatggaattaagattct 315  Q
    |||| ||||||| ||| | ||||||||||| ||||||||| || |||||||||| ||||||| |||| |||||||    
T  32813857 ggaataatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatgaaattgagattct 32813783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 315
Target Start/End: Original strand, 531396 - 531451
Alignment:
Q  260 gaatgaaaccaacacttaaaattgtgttcaattgacgaagatggaattaagattct 315  Q
    ||||||||||| ||||||||| | ||||| ||||| |||||||||||| |||||||    
T  531396 gaatgaaaccagcacttaaaactttgttcgattgaagaagatggaattgagattct 531451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 238 - 315
Target Start/End: Complemental strand, 10917170 - 10917093
Alignment:
Q  238 gatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttcaattgacgaagatggaattaagattct 315  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  10917170 gatggagcaatgtatgaaaattgaatgaaaccaacacttaaaattgtgttcaattgaagaagatggaattgagattct 10917093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 3709511 - 3709561
Alignment:
Q  237 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgtt 287  Q
    |||||||||||||||| |||||||||||||||||||| |||||| ||||||    
T  3709511 tgatggaacaatgtatgaaaattgaatgaaaccaacatttaaaactgtgtt 3709561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 237 - 313
Target Start/End: Complemental strand, 5983720 - 5983644
Alignment:
Q  237 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttcaattgacgaagatggaattaagatt 313  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  5983720 tgatggagcaatgtatgaaaattgaatgaaaccaacacttaaaattgtgttcaattgaagaagatggaattgagatt 5983644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 236 - 315
Target Start/End: Complemental strand, 5989678 - 5989599
Alignment:
Q  236 atgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttcaattgacgaagatggaattaagattct 315  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||| |||||||||||| |||||||    
T  5989678 atgatggaacaatgtatgaaaattgaaggaaaccaacacttaaaactgtgttcaattgaagaagatggaattgagattct 5989599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 237 - 314
Target Start/End: Complemental strand, 4285323 - 4285246
Alignment:
Q  237 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttcaattgacgaagatggaattaagattc 314  Q
    |||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||| |||||||||||| ||||||    
T  4285323 tgatggaacaatgtatgaaaattgaatgaaaccaacatttaaaactgtgttcaattgaagaagatggaattgagattc 4285246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 238 - 313
Target Start/End: Complemental strand, 1645297 - 1645222
Alignment:
Q  238 gatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttcaattgacgaagatggaattaagatt 313  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||||||||| || |||||||||||| |||||    
T  1645297 gatggaacaatgtatgaaaattgaatgaaaccaacacttaaaactgtgttcaatagaagaagatggaattgagatt 1645222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 237 - 315
Target Start/End: Complemental strand, 13273573 - 13273495
Alignment:
Q  237 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttcaattgacgaagatggaattaagattct 315  Q
    |||||||||||||||| ||| | |||||||||||||| |||||| ||||||||||||| ||||||| |||| |||||||    
T  13273573 tgatggaacaatgtatgaaattagaatgaaaccaacatttaaaactgtgttcaattgaagaagatgaaattgagattct 13273495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 237 - 313
Target Start/End: Original strand, 21794333 - 21794409
Alignment:
Q  237 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttcaattgacgaagatggaattaagatt 313  Q
    |||||||||||||||| ||| | ||||||||| | ||||||||| ||||||||||||| |||||||||||| |||||    
T  21794333 tgatggaacaatgtatgaaattagaatgaaactagcacttaaaactgtgttcaattgaagaagatggaattgagatt 21794409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 315
Target Start/End: Original strand, 45485631 - 45485709
Alignment:
Q  237 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttcaattgacgaagatggaattaagattct 315  Q
    |||||||||||||||| ||| | ||||||||||| ||||||||| || |||||||||| ||||||||| || |||||||    
T  45485631 tgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatggagttgagattct 45485709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 315
Target Start/End: Original strand, 45496896 - 45496974
Alignment:
Q  237 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttcaattgacgaagatggaattaagattct 315  Q
    |||||||||||||||| ||| | |||||||| |||||||||||| || |||||||||| ||||||||| || |||||||    
T  45496896 tgatggaacaatgtatgaaattagaatgaaaacaacacttaaaactgagttcaattgaagaagatggagttgagattct 45496974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 315
Target Start/End: Original strand, 45504638 - 45504716
Alignment:
Q  237 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttcaattgacgaagatggaattaagattct 315  Q
    |||||||||||||||| ||| | |||||||| |||||||||||| || |||||||||| ||||||||| || |||||||    
T  45504638 tgatggaacaatgtatgaaattagaatgaaaacaacacttaaaactgagttcaattgaagaagatggagttgagattct 45504716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 315
Target Start/End: Original strand, 43081476 - 43081555
Alignment:
Q  236 atgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttcaattgacgaagatggaattaagattct 315  Q
    ||||| ||||||||||| ||| |  |||||||||| ||||||||| || |||||||||| |||||||||||| |||||||    
T  43081476 atgatcgaacaatgtatgaaattaaaatgaaaccagcacttaaaactgagttcaattgaagaagatggaattgagattct 43081555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 31468927 - 31468972
Alignment:
Q  257 attgaatgaaaccaacacttaaaattgtgttcaattgacgaagatg 302  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||    
T  31468927 attgaatgaaaccaacacttaaaactgtgttcaattgaagaagatg 31468972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 237 - 315
Target Start/End: Complemental strand, 14685586 - 14685508
Alignment:
Q  237 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttcaattgacgaagatggaattaagattct 315  Q
    ||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||    
T  14685586 tgatgaaacaatgtatgaaaattgaatgaaaccaacacttaaaactgtgttcaattgaagaagatggaattgagattct 14685508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 237 - 312
Target Start/End: Complemental strand, 11096415 - 11096340
Alignment:
Q  237 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttcaattgacgaagatggaattaagat 312  Q
    |||||||||||||||| ||| | ||||||||||||||||||||| ||||||||||||| |||||||||||| ||||    
T  11096415 tgatggaacaatgtatgaaattagaatgaaaccaacacttaaaactgtgttcaattgaagaagatggaattgagat 11096340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 237 - 315
Target Start/End: Original strand, 367160 - 367238
Alignment:
Q  237 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttcaattgacgaagatggaattaagattct 315  Q
    |||| ||||||||||| |||||||||||||||||||| |||||| ||||||||||||| |||||||||||| |||||||    
T  367160 tgatagaacaatgtatgaaaattgaatgaaaccaacatttaaaactgtgttcaattgaagaagatggaattgagattct 367238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 233 - 315
Target Start/End: Complemental strand, 7534425 - 7534343
Alignment:
Q  233 atcatgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttcaattgacgaagatggaattaagattct 315  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||  ||| |||||||||  ||||||||||| |||||||    
T  7534425 atcatgatggaacaatgtatgaaaattgaatgaaaccaacacttaaatctgtattcaattgaaaaagatggaattgagattct 7534343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 237 - 315
Target Start/End: Original strand, 7501212 - 7501290
Alignment:
Q  237 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttcaattgacgaagatggaattaagattct 315  Q
    |||||||||||||||| ||| | ||||||||||||||| ||||| ||||||||||||| |||||||||||| |||||||    
T  7501212 tgatggaacaatgtatgaaattagaatgaaaccaacacctaaaactgtgttcaattgaagaagatggaattgagattct 7501290  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 305
Target Start/End: Complemental strand, 31888783 - 31888714
Alignment:
Q  236 atgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttcaattgacgaagatggaa 305  Q
    |||||| || ||||||| ||| | ||||||||||||||||||||| || |||||||||| ||||||||||    
T  31888783 atgatgaaaaaatgtatgaaattggaatgaaaccaacacttaaaactgggttcaattgaagaagatggaa 31888714  T

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Target: scaffold0014 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 34667 - 34602
Alignment:
Q  237 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttcaattgacgaagatg 302  Q
    |||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||| |||||||    
T  34667 tgatggaacagtgtataaagattgaatgaaaccaacacttaaaactgtgttcaattgaagaagatg 34602  T

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Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 237 - 313
Target Start/End: Complemental strand, 53008556 - 53008480
Alignment:
Q  237 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttcaattgacgaagatggaattaagatt 313  Q
    ||||||||||||| || ||| | ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||    
T  53008556 tgatggaacaatgcatgaaattagaatgaaaccaacacttaaaattgtgttccattgaagaagatggaataaagatt 53008480  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 236 - 315
Target Start/End: Complemental strand, 53011451 - 53011372
Alignment:
Q  236 atgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttcaattgacgaagatggaattaagattct 315  Q
    ||||||||||||||||| ||| | ||||||||||||||||||||| ||||||||||||| ||||||| |||  |||||||    
T  53011451 atgatggaacaatgtatgaaattagaatgaaaccaacacttaaaactgtgttcaattgaagaagatgaaatagagattct 53011372  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 243 - 313
Target Start/End: Original strand, 28571346 - 28571416
Alignment:
Q  243 aacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttcaattgacgaagatggaattaagatt 313  Q
    |||||||||| ||| | ||||||||||||||||||||| | ||||||||||| |||||||||||| |||||    
T  28571346 aacaatgtatgaaattagaatgaaaccaacacttaaaactatgttcaattgaagaagatggaattgagatt 28571416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 282
Target Start/End: Complemental strand, 56563313 - 56563268
Alignment:
Q  237 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaatt 282  Q
    |||||||||||||||| ||| | ||||||||||| |||||||||||    
T  56563313 tgatggaacaatgtatgaaattagaatgaaaccagcacttaaaatt 56563268  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 259 - 315
Target Start/End: Original strand, 35323886 - 35323942
Alignment:
Q  259 tgaatgaaaccaacacttaaaattgtgttcaattgacgaagatggaattaagattct 315  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||    
T  35323886 tgaatgaaaccaacacttaaaactgtgttcaattgaagaagatggaattgagattct 35323942  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 315
Target Start/End: Original strand, 22582180 - 22582258
Alignment:
Q  237 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttcaattgacgaagatggaattaagattct 315  Q
    |||||||||||||||| ||| | ||||||||||| || ||||||||| |||||||||| ||||||| |||| |||||||    
T  22582180 tgatggaacaatgtatgaaattagaatgaaaccagcatttaaaattgagttcaattgaagaagatgaaattgagattct 22582258  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 315
Target Start/End: Complemental strand, 35703495 - 35703417
Alignment:
Q  237 tgatggaacaatgtataaaaattgaatgaaaccaacacttaaaattgtgttcaattgacgaagatggaattaagattct 315  Q
    |||||||||||||||| ||| | ||||||||||| ||||||||| || |||||||||| |||||| ||||| |||||||    
T  35703495 tgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatagaattgagattct 35703417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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