View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19210_low_3 (Length: 802)

Name: NF19210_low_3
Description: NF19210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19210_low_3
NF19210_low_3
[»] chr5 (6 HSPs)
chr5 (22-377)||(29589061-29589416)
chr5 (354-403)||(17980299-17980348)
chr5 (709-784)||(30680567-30680642)
chr5 (194-268)||(17980440-17980514)
chr5 (725-784)||(30056578-30056637)
chr5 (706-784)||(30203567-30203645)
[»] chr1 (4 HSPs)
chr1 (353-787)||(7095766-7096202)
chr1 (564-650)||(7585105-7585191)
chr1 (352-406)||(7584957-7585012)
chr1 (725-787)||(7585252-7585314)
[»] chr7 (2 HSPs)
chr7 (560-643)||(9624574-9624657)
chr7 (347-399)||(9623946-9623999)
[»] chr4 (3 HSPs)
chr4 (560-643)||(13612589-13612672)
chr4 (708-781)||(20302781-20302854)
chr4 (347-399)||(13613246-13613299)


Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 22 - 377
Target Start/End: Complemental strand, 29589416 - 29589061
Alignment:
Q  22 gagcgcggcaagaagtggttgatgaagtctcaactatcacaagttcatcgtcatcgtcttcatcatcaccaaggtctgtattgccaataccacataagac 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  29589416 gagcgcggcaagaagtggttgatgaagtctcaactatcacaagttcatcgtcatcatcttcatcatcaccaaggtctgtattgccaataccacataagac 29589317  T
Q  122 agaagcagaccaagagataaacctaggtgttcaacaatctgacatggagaatgtgatacaagaatcagtaaatggtgaaggttcacttgaatccatgtct 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29589316 agaagcagaccaagagataaacctaggtgttcaacaatctgacatggagaatgtgatacaagaatcagtaaatggtgaaggttcacttgaatccatgtct 29589217  T
Q  222 caaaatgttcagccttccatcgatgattcaactgatgaatcacataatggtgatttgattcattctcaggtgtgagttctgctagatttttgttatttgt 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29589216 caaaatgttcagccttccatcgatgattcaactgatgaatcacataatggtgacttgattcattctcaggtgtgagttctgctagatttttgttatttgt 29589117  T
Q  322 ttttaatttatttnnnnnnntctcaaacaatggcatatcataattaagaaatattt 377  Q
    |||||||||||||       |||| |||||||||||||||||||||||||||||||    
T  29589116 ttttaatttatttaaaaaaatctcgaacaatggcatatcataattaagaaatattt 29589061  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 354 - 403
Target Start/End: Complemental strand, 17980348 - 17980299
Alignment:
Q  354 gcatatcataattaagaaatatttaaatttaaatggtttatcatttgtca 403  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17980348 gcatatgataattaagaaatatttaaatttaaatggtttatcatttgtca 17980299  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 709 - 784
Target Start/End: Original strand, 30680567 - 30680642
Alignment:
Q  709 tgtcaaccatatgggccagatgatcattatcgcgtctctacttccattggtgctggaattgatatggtatagatct 784  Q
    |||||||| |||||| ||||| ||| ||||||| |||| |||||| ||| |||||| |||||||||||||||||||    
T  30680567 tgtcaaccttatgggtcagattatcgttatcgcatctccacttccgttgatgctggtattgatatggtatagatct 30680642  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 194 - 268
Target Start/End: Complemental strand, 17980514 - 17980440
Alignment:
Q  194 tggtgaaggttcacttgaatccatgtctcaaaatgttcagccttccatcgatgattcaactgatgaatcacataa 268  Q
    |||||||||| | ||||| ||||||||||||||| |||||| |||||| |||||| ||| || ||||||||||||    
T  17980514 tggtgaaggtcctcttgactccatgtctcaaaatattcagctttccatggatgatccaaatgttgaatcacataa 17980440  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 725 - 784
Target Start/End: Complemental strand, 30056637 - 30056578
Alignment:
Q  725 cagatgatcattatcgcgtctctacttccattggtgctggaattgatatggtatagatct 784  Q
    ||||| ||| ||||||||| || |||||||||| |||||| |||||||||||||||||||    
T  30056637 cagattatcgttatcgcgtttccacttccattgatgctggtattgatatggtatagatct 30056578  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 706 - 784
Target Start/End: Complemental strand, 30203645 - 30203567
Alignment:
Q  706 ttatgtcaaccatatgggccagatgatcattatcgcgtctctacttccattggtgctggaattgatatggtatagatct 784  Q
    ||||| ||||| |||| | ||||| |||||| ||||||||| |||  ||| | ||||||||| ||||||||||||||||    
T  30203645 ttatgccaaccttatgcgtcagattatcattctcgcgtctccactctcatggatgctggaatagatatggtatagatct 30203567  T

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Target: chr1 (Bit Score: 317; Significance: 1e-178; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 353 - 787
Target Start/End: Complemental strand, 7096202 - 7095766
Alignment:
Q  353 ggcatatcataattaagaaatatttaaatttaaatggtttatcatttgtcattaataatagtgcatcaatgtcgtcattggattataatatagccaatct 452  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  7096202 ggcatatcataattaagaaatatttaaatttaaatggtttatcatttgtcattaataatagtgcattaatgtcgtcattggattataatatagccaatct 7096103  T
Q  453 aacttattgtggaaaggnnnnnnnnnnnnnnn-gacaaaatggaaaggtttttgttgttttgtaaacttataatagattcaagacacacacnnnnnnnnn 551  Q
    |||||||||||||||||                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             
T  7096102 aacttattgtggaaaggttttttttttttttttgacaaaatggaaaggtttttgttgttttgtaaacttataatagattcaagacacacacaaaataaaa 7096003  T
Q  552 nnnnnnnncacaacatcatagaacatgcgtgtaacttggttttcttttcataatgttatttgtgatattgactaggagggcatttatcccttggagaaca 651  Q
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7096002 taaaaaaacacaacatcatagaacatgcgtgtaacttggttttcttttcataatgttatttgtgatattgactaggagggcatttatcccttggagaaca 7095903  T
Q  652 agtttgaagtaacgaagaacaaaagttatttgt-acatttttgaagaacattgatttatgtcaaccatatgggccagatgatcattatcgcgtctctact 750  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7095902 agtttgaagtcacgaagaacaaaagttatttgtgacatttttgaagaacattgatttatgtcaaccatatgggccagatgatcattatcgcgtctctact 7095803  T
Q  751 tccattggtgctggaattgatatggtatagatctcca 787  Q
    |||||||||||||||||||||||||||||||||||||    
T  7095802 tccattggtgctggaattgatatggtatagatctcca 7095766  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 564 - 650
Target Start/End: Original strand, 7585105 - 7585191
Alignment:
Q  564 acatcatagaacatgcgtgtaacttggttttcttttcataatgttatttgtgatattgactaggagggcatttatcccttggagaac 650  Q
    ||||||| |||||||| |||||||||||||||||||| |||||| |||||||| |||||||||||||||| |||||||||| |||||    
T  7585105 acatcattgaacatgcatgtaacttggttttcttttcctaatgtaatttgtgacattgactaggagggcacttatcccttgaagaac 7585191  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 352 - 406
Target Start/End: Original strand, 7584957 - 7585012
Alignment:
Q  352 tggcatatcataattaagaaatatttaaatttaaatgg-tttatcatttgtcatta 406  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7584957 tggcatatcataattaagaaatatttaaatttaaatggttttatcatttgtcatta 7585012  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 725 - 787
Target Start/End: Original strand, 7585252 - 7585314
Alignment:
Q  725 cagatgatcattatcgcgtctctacttccattggtgctggaattgatatggtatagatctcca 787  Q
    |||||||||||||||| |||||||||||||||| ||||| |||||||||||||| ||||||||    
T  7585252 cagatgatcattatcgtgtctctacttccattgatgctgaaattgatatggtatggatctcca 7585314  T

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Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 560 - 643
Target Start/End: Original strand, 9624574 - 9624657
Alignment:
Q  560 cacaacatcatagaacatgcgtgtaacttggttttcttttcataatgttatttgtgatattgactaggagggcatttatccctt 643  Q
    ||||||||||| |||||||| ||||||||||||||| ||   ||||||||||||||||||| ||||||| ||||||||||||||    
T  9624574 cacaacatcattgaacatgcttgtaacttggttttcattatctaatgttatttgtgatatttactaggaaggcatttatccctt 9624657  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 347 - 399
Target Start/End: Original strand, 9623946 - 9623999
Alignment:
Q  347 aacaatggcatatcataattaagaaat-atttaaatttaaatggtttatcattt 399  Q
    |||| ||||||||||||||||| |||| |  |||||||||||||||||||||||    
T  9623946 aacattggcatatcataattaaaaaattaaataaatttaaatggtttatcattt 9623999  T

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Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 560 - 643
Target Start/End: Complemental strand, 13612672 - 13612589
Alignment:
Q  560 cacaacatcatagaacatgcgtgtaacttggttttcttttcataatgttatttgtgatattgactaggagggcatttatccctt 643  Q
    ||||||||||| |||||||| ||||||||||||||| ||   ||||||||||||||||||| ||||||| ||||||||||||||    
T  13612672 cacaacatcattgaacatgcttgtaacttggttttcattatctaatgttatttgtgatatttactaggaaggcatttatccctt 13612589  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 708 - 781
Target Start/End: Original strand, 20302781 - 20302854
Alignment:
Q  708 atgtcaaccatatgggccagatgatcattatcgcgtctctacttccattggtgctggaattgatatggtataga 781  Q
    |||||||||  ||||| ||||| ||| |||||||||||  |||||| ||| |||||| ||||||||||||||||    
T  20302781 atgtcaacctgatgggtcagattatcgttatcgcgtctacacttccgttgatgctggtattgatatggtataga 20302854  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 347 - 399
Target Start/End: Complemental strand, 13613299 - 13613246
Alignment:
Q  347 aacaatggcatatcataattaagaaat-atttaaatttaaatggtttatcattt 399  Q
    |||| ||||||||||||||||| |||| |  |||||||||||||||||||||||    
T  13613299 aacattggcatatcataattaaaaaattaaataaatttaaatggtttatcattt 13613246  T

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