View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19210_low_36 (Length: 271)
Name: NF19210_low_36
Description: NF19210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19210_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 9 - 256
Target Start/End: Complemental strand, 40661714 - 40661468
Alignment:
| Q |
9 |
gagcacagagccgcacatgtttatcgaggagttggtaacaacaatggaaggacaaggcatttgccatacacatcctgaaaatcttccagctgagaattct |
108 |
Q |
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| T |
40661714 |
gagcacaaagccgcacatgtttatcgacgagt-ggtaacaacaatggaaggacaaggcatttgctatacacatcctgaaaatcttccagctgagaattct |
40661616 |
T |
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| Q |
109 |
ctgaccaatttcgactacataaatatttaccggtttgtttgtccattatattttatcaatgaactgtaaaatcaatttagtggtgaacatgcaacatatc |
208 |
Q |
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| T |
40661615 |
ctgaccaatttcgactacataaatatttaccggtttgtttgtccattatattttatcaatgaactgtaaaatcaatttagtggtgaacatgcaacatatc |
40661516 |
T |
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| Q |
209 |
ccatggtttaagcttaaggaaatagaggaatgcttctggtatgatttg |
256 |
Q |
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| T |
40661515 |
ccatggtttaagcttaaggaaatagaggaatgcttctggtatgatttg |
40661468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 11903860 - 11903972
Alignment:
| Q |
22 |
cacatgtttatcgaggagttggtaacaacaatggaagga---caaggcatttgccatacacatcctgaaaatcttccagctgagaattctctgaccaatt |
118 |
Q |
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|||||||||||||||||||| || ||||| |||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
11903860 |
cacatgtttatcgaggagttcataccaacattggaaggagaacaaggcatttgctatacacatcctgaaaatcttccaggtgagaattctctgtccaatt |
11903959 |
T |
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| Q |
119 |
tcgactacataaa |
131 |
Q |
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| T |
11903960 |
tatactacataaa |
11903972 |
T |
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