View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19210_low_40 (Length: 251)
Name: NF19210_low_40
Description: NF19210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19210_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 86 - 235
Target Start/End: Complemental strand, 34228102 - 34227953
Alignment:
| Q |
86 |
tcctttgaataagaatattaacaaattcacgagaaggttagctgcatatacctattaatgaagcagctaaccttacttaaagatcaagttgtgcactatc |
185 |
Q |
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| T |
34228102 |
tcctttgaataagaatattaacaaattcacgagaaggttagctgcatatacctattaatgaagcagctaaccttacttaaagatcaagttgtgcactatc |
34228003 |
T |
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| Q |
186 |
ttcacttataagcaacctaatgtcaatcaagtctccaaaccaaagcatgc |
235 |
Q |
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| T |
34228002 |
ttcacttataagcaacctaatgtcaatcaagtctccaaaccaaagcatgc |
34227953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 34228229 - 34228135
Alignment:
| Q |
15 |
atatgaaaatatttagtattcaagtcaccctcctgatccggtgcgttttagctctctgtttccaaaacaattcctttgaataagaatattaacaa |
109 |
Q |
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| T |
34228229 |
atatgaaaatatttagtattcaagtcaccctcctgatccggtgcgttttagctctctgtttccaaaacaattcctttgaataagaatattaacaa |
34228135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 133 - 229
Target Start/End: Complemental strand, 2678646 - 2678550
Alignment:
| Q |
133 |
atacctattaatgaagcagctaaccttacttaaagatcaagttgtgcactatcttcacttataagcaacctaatgtcaatcaagtctccaaaccaaa |
229 |
Q |
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| T |
2678646 |
atacctatttctgaagcagctaaccttacataaagatcaagttgtaaactatcttcacttataaacaacctaatgtcaatcaaatccccaaaccaaa |
2678550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 133 - 217
Target Start/End: Original strand, 3052070 - 3052154
Alignment:
| Q |
133 |
atacctattaatgaagcagctaaccttacttaaagatcaagttgtgcactatcttcacttataagcaacctaatgtcaatcaagt |
217 |
Q |
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| T |
3052070 |
atacctatttctgaggcagctaaccttacataaagatcaagttgtaaactattttcacttataaacaacctaatgtcaaccaagt |
3052154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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