View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19210_low_41 (Length: 250)
Name: NF19210_low_41
Description: NF19210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19210_low_41 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 112 - 250
Target Start/End: Original strand, 7278608 - 7278749
Alignment:
| Q |
112 |
ataaagcttccactttgtcaccttcctcatcttcaccacccccctccttcatcaaaaaattatattct---ttcacacatttaccctcgctaccatcctc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||| |
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| T |
7278608 |
ataaagcttccactttgtcaccttcctcatcttcaccacccccctccttcatcaaaaaatgatcttcttctttcacacatttaccctcgctaccatcctc |
7278707 |
T |
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| Q |
209 |
attcatcaaaggtcccattttttcacctccctcattcttctc |
250 |
Q |
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| T |
7278708 |
attcatcaaaggtcccattttttcacctccctcattcttctc |
7278749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 112 - 250
Target Start/End: Complemental strand, 7375231 - 7375090
Alignment:
| Q |
112 |
ataaagcttccactttgtcaccttcctcatcttcaccacccccctccttcatcaaaaaattatattctt---tcacacatttaccctcgctaccatcctc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||| |
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| T |
7375231 |
ataaagcttccactttgtcaccttcctcatcttcaccacccccctccttcatcaaaaaatgatcttcttctttcacacatttaccctcgctaccatcctc |
7375132 |
T |
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| Q |
209 |
attcatcaaaggtcccattttttcacctccctcattcttctc |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
7375131 |
attcatcaaaggtcccattttttcacctccctcattcttctc |
7375090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 7278497 - 7278549
Alignment:
| Q |
1 |
tcttcttcacatcctcattgctctcctcattccccaaagcttcaaatttttca |
53 |
Q |
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| T |
7278497 |
tcttcttcacatcctcattgttctcctcattccccaaagcttcaaatttttca |
7278549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 7375342 - 7375290
Alignment:
| Q |
1 |
tcttcttcacatcctcattgctctcctcattccccaaagcttcaaatttttca |
53 |
Q |
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| T |
7375342 |
tcttcttcacatcctcattgttctcctcattccccaaagcttcaaatttttca |
7375290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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