View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19210_low_43 (Length: 250)

Name: NF19210_low_43
Description: NF19210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19210_low_43
NF19210_low_43
[»] chr3 (9 HSPs)
chr3 (56-248)||(45004358-45004550)
chr3 (11-71)||(45004002-45004062)
chr3 (141-186)||(22754761-22754806)
chr3 (140-188)||(39926477-39926525)
chr3 (138-183)||(51171086-51171131)
chr3 (138-181)||(16280912-16280955)
chr3 (138-167)||(16280575-16280604)
chr3 (140-181)||(44798745-44798786)
chr3 (141-181)||(39926413-39926453)
[»] chr4 (11 HSPs)
chr4 (11-70)||(43634453-43634512)
chr4 (100-196)||(43634357-43634452)
chr4 (138-188)||(46844622-46844672)
chr4 (136-181)||(5314398-5314443)
chr4 (132-181)||(23811319-23811367)
chr4 (137-181)||(23811350-23811394)
chr4 (140-186)||(45682811-45682857)
chr4 (132-187)||(5314359-5314415)
chr4 (138-181)||(32304743-32304786)
chr4 (135-185)||(10011622-10011672)
chr4 (135-185)||(10018763-10018813)
[»] chr2 (4 HSPs)
chr2 (139-188)||(24582535-24582584)
chr2 (139-181)||(24582470-24582512)
chr2 (138-181)||(3816277-3816320)
chr2 (132-181)||(24582495-24582545)
[»] chr1 (5 HSPs)
chr1 (132-188)||(32306406-32306462)
chr1 (137-181)||(21258316-21258360)
chr1 (136-181)||(19062888-19062933)
chr1 (136-181)||(32306445-32306490)
chr1 (140-181)||(32713247-32713288)
[»] chr5 (11 HSPs)
chr5 (136-185)||(17066848-17066897)
chr5 (138-181)||(20419551-20419594)
chr5 (140-205)||(3040062-3040127)
chr5 (132-186)||(20419513-20419568)
chr5 (141-181)||(17854694-17854734)
chr5 (134-185)||(2190333-2190384)
chr5 (138-181)||(14410733-14410776)
chr5 (136-183)||(18936713-18936760)
chr5 (139-181)||(25994590-25994632)
chr5 (139-181)||(25994911-25994953)
chr5 (139-180)||(126849-126890)
[»] chr7 (8 HSPs)
chr7 (132-188)||(34328605-34328661)
chr7 (126-188)||(9384639-9384701)
chr7 (139-181)||(23284773-23284815)
chr7 (141-188)||(11561423-11561470)
chr7 (142-184)||(43466745-43466787)
chr7 (144-181)||(34328644-34328681)
chr7 (137-181)||(9384678-9384722)
chr7 (137-165)||(47441665-47441693)
[»] chr6 (7 HSPs)
chr6 (137-183)||(9875774-9875820)
chr6 (136-181)||(9863453-9863498)
chr6 (132-181)||(9863519-9863568)
chr6 (142-181)||(32879736-32879775)
chr6 (132-188)||(9863551-9863607)
chr6 (141-181)||(26622233-26622273)
chr6 (141-181)||(26728211-26728251)
[»] chr8 (2 HSPs)
chr8 (142-188)||(31271851-31271897)
chr8 (143-181)||(13461231-13461269)
[»] scaffold0012 (1 HSPs)
scaffold0012 (142-180)||(36154-36192)


Alignment Details
Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 56 - 248
Target Start/End: Original strand, 45004358 - 45004550
Alignment:
Q  56 aagaaactggaatttggaattagaaatcactgcgtgaattcaaatggaaaaatatttccgcggaaattctattgtaaattcctgcgtgagttaactcacg 155  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||    
T  45004358 aagaaactggaatttggaatcagtaatcactgcgtgaattcaaatggaaaaatatttatgcagaaattctattgtaaattcctgcgtgagttaactcacg 45004457  T
Q  156 caagtgttaattacagcgtgagttaagttgcgcggcgttagttaactaatataggggtattttgggcaacgctgcaggatgcgagcgaaaagt 248  Q
    |||||||||||| || |||||||||||||||| ||||||||||||||||  ||||||||||||| |||| |||||||   |||||||||||||    
T  45004458 caagtgttaattccaacgtgagttaagttgcgtggcgttagttaactaacgtaggggtattttgagcaaggctgcagagcgcgagcgaaaagt 45004550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 45004002 - 45004062
Alignment:
Q  11 atgaataaaggggaagcaactaaattggaataaaaggataacgataagaaactggaatttg 71  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  45004002 atgaataaagaggaagcaactaaattggaataaaaggataacaataagaaactggattttg 45004062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 22754806 - 22754761
Alignment:
Q  141 gtgagttaactcacgcaagtgttaattacagcgtgagttaagttgc 186  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  22754806 gtgagttaactcacgcaagtgttaattccagcgtgagttaagttgc 22754761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 39926477 - 39926525
Alignment:
Q  140 cgtgagttaactcacgcaagtgttaattacagcgtgagttaagttgcgc 188  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  39926477 cgtgagttaactcacgaaagtgttaattccagcgtgagttaagttgcgc 39926525  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 183
Target Start/End: Complemental strand, 51171131 - 51171086
Alignment:
Q  138 tgcgtgagttaactcacgcaagtgttaattacagcgtgagttaagt 183  Q
    |||||||||||||||||||| ||||||||| |||||||| ||||||    
T  51171131 tgcgtgagttaactcacgcacgtgttaatttcagcgtgacttaagt 51171086  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 181
Target Start/End: Original strand, 16280912 - 16280955
Alignment:
Q  138 tgcgtgagttaactcacgcaagtgttaattacagcgtgagttaa 181  Q
    ||||||||||||||||| |||||||||||| | |||||||||||    
T  16280912 tgcgtgagttaactcacccaagtgttaatttcggcgtgagttaa 16280955  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 167
Target Start/End: Complemental strand, 16280604 - 16280575
Alignment:
Q  138 tgcgtgagttaactcacgcaagtgttaatt 167  Q
    ||||||||||||||||||||||||||||||    
T  16280604 tgcgtgagttaactcacgcaagtgttaatt 16280575  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 44798745 - 44798786
Alignment:
Q  140 cgtgagttaactcacgcaagtgttaattacagcgtgagttaa 181  Q
    ||||||||||||||||||||||||| || |||||||| ||||    
T  44798745 cgtgagttaactcacgcaagtgttagttccagcgtgaattaa 44798786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 39926413 - 39926453
Alignment:
Q  141 gtgagttaactcacgcaagtgttaattacagcgtgagttaa 181  Q
    ||||||||| ||||||||||||||||| |||||||| ||||    
T  39926413 gtgagttaattcacgcaagtgttaatttcagcgtgaattaa 39926453  T

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Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 43634512 - 43634453
Alignment:
Q  11 atgaataaaggggaagcaactaaattggaataaaaggataacgataagaaactggaattt 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43634512 atgaataaaggggaagcaactaaattggaataaaaggataacgataagaaactggaattt 43634453  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 100 - 196
Target Start/End: Complemental strand, 43634452 - 43634357
Alignment:
Q  100 tggaaaaatatttccgcggaaattctattgtaaattcctgcgtgagttaactcacgcaagtgttaattacagcgtgagttaagttgcgcggcgttag 196  Q
    |||||||||||||  || |||||||||||||||||||||||||||||||||||| | |||| ||||||  |  ||||||||||||||||| ||||||    
T  43634452 tggaaaaatatttt-gcagaaattctattgtaaattcctgcgtgagttaactcatgtaagtattaattttaaggtgagttaagttgcgcgacgttag 43634357  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 188
Target Start/End: Original strand, 46844622 - 46844672
Alignment:
Q  138 tgcgtgagttaactcacgcaagtgttaattacagcgtgagttaagttgcgc 188  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||    
T  46844622 tgcgtgagttaactcacgcaagtgttaatttcaacgtgagttaagttgcgc 46844672  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 5314443 - 5314398
Alignment:
Q  136 cctgcgtgagttaactcacgcaagtgttaattacagcgtgagttaa 181  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||    
T  5314443 cctgcgtgagttaactcacgcaagtgttaattccagcgtgaattaa 5314398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 23811367 - 23811319
Alignment:
Q  132 aattcctgcgtgagttaactcacgcaagtgttaattacagcgtgagttaa 181  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  23811367 aattccagcgtgagttaactcacgcaagt-ttaattacagcgtgagttaa 23811319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 23811394 - 23811350
Alignment:
Q  137 ctgcgtgagttaactcacgcaagtgttaattacagcgtgagttaa 181  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||    
T  23811394 ctgcgtgagataactcacgcaagtgttaattccagcgtgagttaa 23811350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 45682857 - 45682811
Alignment:
Q  140 cgtgagttaactcacgcaagtgttaattacagcgtgagttaagttgc 186  Q
    |||||||||||||| ||||||||||||| || |||||||||||||||    
T  45682857 cgtgagttaactcaggcaagtgttaattccaacgtgagttaagttgc 45682811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 187
Target Start/End: Complemental strand, 5314415 - 5314359
Alignment:
Q  132 aattcctgcgtgagttaactcacgcaagtgttaa-ttacagcgtgagttaagttgcg 187  Q
    |||||| |||||| |||||||||||||||||||| || |||||| ||||||||||||    
T  5314415 aattccagcgtgaattaactcacgcaagtgttaatttccagcgtaagttaagttgcg 5314359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 181
Target Start/End: Original strand, 32304743 - 32304786
Alignment:
Q  138 tgcgtgagttaactcacgcaagtgttaattacagcgtgagttaa 181  Q
    ||||||||||||||||| || ||||||||| |||||||||||||    
T  32304743 tgcgtgagttaactcacacatgtgttaatttcagcgtgagttaa 32304786  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 185
Target Start/End: Original strand, 10011622 - 10011672
Alignment:
Q  135 tcctgcgtgagttaactcacgcaagtgttaattacagcgtgagttaagttg 185  Q
    |||||| |||||||||||||||||||||| ||| |||||||| ||| ||||    
T  10011622 tcctgcatgagttaactcacgcaagtgttgatttcagcgtgaattacgttg 10011672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 185
Target Start/End: Original strand, 10018763 - 10018813
Alignment:
Q  135 tcctgcgtgagttaactcacgcaagtgttaattacagcgtgagttaagttg 185  Q
    |||||| |||||||||||||||||||||| ||| |||||||| ||| ||||    
T  10018763 tcctgcatgagttaactcacgcaagtgttgatttcagcgtgaattacgttg 10018813  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 24582535 - 24582584
Alignment:
Q  139 gcgtgagttaactcacgcaagtgttaattacagcgtgagttaagttgcgc 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24582535 gcgtgagttaactcacgcaagtgttaattacagcgtgagttaagttgcgc 24582584  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 24582470 - 24582512
Alignment:
Q  139 gcgtgagttaactcacgcaagtgttaattacagcgtgagttaa 181  Q
    |||||| |||||||||||||||||||||| |||||||||||||    
T  24582470 gcgtgacttaactcacgcaagtgttaattccagcgtgagttaa 24582512  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 181
Target Start/End: Original strand, 3816277 - 3816320
Alignment:
Q  138 tgcgtgagttaactcacgcaagtgttaattacagcgtgagttaa 181  Q
    |||||||||||||| ||||| |||||||||||| ||||||||||    
T  3816277 tgcgtgagttaacttacgcaggtgttaattacaacgtgagttaa 3816320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 24582495 - 24582545
Alignment:
Q  132 aattcctgcgtgagttaactcacgcaagtgttaatt-acagcgtgagttaa 181  Q
    |||||| |||||||||||||||| ||||||||||||  |||||||||||||    
T  24582495 aattccagcgtgagttaactcactcaagtgttaattcccagcgtgagttaa 24582545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 32306462 - 32306406
Alignment:
Q  132 aattcctgcgtgagttaactcacgcaagtgttaattacagcgtgagttaagttgcgc 188  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32306462 aattccagcgtgagttaactcacgcaagtgttaatttcagcgtgagttaagttgcgc 32306406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 181
Target Start/End: Original strand, 21258316 - 21258360
Alignment:
Q  137 ctgcgtgagttaactcacgcaagtgttaattacagcgtgagttaa 181  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  21258316 ctgcgtgagttaactcacgcaagtgttaattccagcgtgagttaa 21258360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 19062888 - 19062933
Alignment:
Q  136 cctgcgtgagttaactcacgcaagtgttaattacagcgtgagttaa 181  Q
    ||||| |||||||| ||||||||||||||||| |||||||||||||    
T  19062888 cctgcatgagttaattcacgcaagtgttaatttcagcgtgagttaa 19062933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 32306490 - 32306445
Alignment:
Q  136 cctgcgtgagttaactcacgcaagtgttaattacagcgtgagttaa 181  Q
    |||||||||||||||||| |||||||| |||| |||||||||||||    
T  32306490 cctgcgtgagttaactcatgcaagtgtcaattccagcgtgagttaa 32306445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 32713288 - 32713247
Alignment:
Q  140 cgtgagttaactcacgcaagtgttaattacagcgtgagttaa 181  Q
    ||||||||||||||||||||||||||||  ||||||||||||    
T  32713288 cgtgagttaactcacgcaagtgttaattttagcgtgagttaa 32713247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 185
Target Start/End: Complemental strand, 17066897 - 17066848
Alignment:
Q  136 cctgcgtgagttaactcacgcaagtgttaattacagcgtgagttaagttg 185  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  17066897 cctgcgtgagttaactcatgcaagtgttaattccagcgtgagttaagttg 17066848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 181
Target Start/End: Complemental strand, 20419594 - 20419551
Alignment:
Q  138 tgcgtgagttaactcacgcaagtgttaattacagcgtgagttaa 181  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  20419594 tgcgtgagttaactcacgcaagtgttaattccagcgtgagttaa 20419551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 3040062 - 3040127
Alignment:
Q  140 cgtgagttaactcacgcaagtgttaattacagcgtgagttaagttgcgcggcgttagttaactaat 205  Q
    ||||||||||||||| ||||  |||||| ||||||||||| |||||||| |||||| |||||||||    
T  3040062 cgtgagttaactcacacaagatttaatttcagcgtgagttgagttgcgcagcgttacttaactaat 3040127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 20419568 - 20419513
Alignment:
Q  132 aattcctgcgtgagttaactcacgcaagtgttaa-ttacagcgtgagttaagttgc 186  Q
    |||||| ||||||||||||||||||||||||||| || || |||||||||||||||    
T  20419568 aattccagcgtgagttaactcacgcaagtgttaatttccaacgtgagttaagttgc 20419513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 17854694 - 17854734
Alignment:
Q  141 gtgagttaactcacgcaagtgttaattacagcgtgagttaa 181  Q
    |||||||||||||| |||||||||||| |||||||||||||    
T  17854694 gtgagttaactcacacaagtgttaatttcagcgtgagttaa 17854734  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 185
Target Start/End: Complemental strand, 2190384 - 2190333
Alignment:
Q  134 ttcctgcgtgagttaactcacgcaagtgttaattacagcgtgagttaagttg 185  Q
    |||| ||||||||||||| || |||| ||||||| |||||||||||||||||    
T  2190384 ttccagcgtgagttaacttacacaagcgttaattccagcgtgagttaagttg 2190333  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 181
Target Start/End: Original strand, 14410733 - 14410776
Alignment:
Q  138 tgcgtgagttaactcacgcaagtgttaattacagcgtgagttaa 181  Q
    |||||||||||||||||||| ||||||||| |||| ||||||||    
T  14410733 tgcgtgagttaactcacgcacgtgttaatttcagcatgagttaa 14410776  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 18936760 - 18936713
Alignment:
Q  136 cctgcgtgagttaactcacgcaagtgttaattacagcgtgagttaagt 183  Q
    |||||||||||||||||||||||||||||  | |||||||| ||||||    
T  18936760 cctgcgtgagttaactcacgcaagtgttacatgcagcgtgacttaagt 18936713  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 25994632 - 25994590
Alignment:
Q  139 gcgtgagttaactcacgcaagtgttaattacagcgtgagttaa 181  Q
    ||||||||||||||||||| ||||||||| | |||||||||||    
T  25994632 gcgtgagttaactcacgcaggtgttaatttctgcgtgagttaa 25994590  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 25994911 - 25994953
Alignment:
Q  139 gcgtgagttaactcacgcaagtgttaattacagcgtgagttaa 181  Q
    |||||||||||||||||||||||||||||   |||||||||||    
T  25994911 gcgtgagttaactcacgcaagtgttaattctcgcgtgagttaa 25994953  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 180
Target Start/End: Complemental strand, 126890 - 126849
Alignment:
Q  139 gcgtgagttaactcacgcaagtgttaattacagcgtgagtta 180  Q
    |||||| |||||||||||| ||||||||| ||||||||||||    
T  126890 gcgtgacttaactcacgcaggtgttaattccagcgtgagtta 126849  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 34328661 - 34328605
Alignment:
Q  132 aattcctgcgtgagttaactcacgcaagtgttaattacagcgtgagttaagttgcgc 188  Q
    |||||| ||||||||||||||||||||||||||||| || |||||||||| ||||||    
T  34328661 aattccagcgtgagttaactcacgcaagtgttaattccaacgtgagttaaattgcgc 34328605  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 126 - 188
Target Start/End: Complemental strand, 9384701 - 9384639
Alignment:
Q  126 attgtaaattcctgcgtgagttaactcacgcaagtgttaattacagcgtgagttaagttgcgc 188  Q
    ||||| |||||| ||||||||||||| | ||||||||||||| ||| ||||||||||||||||    
T  9384701 attgttaattccagcgtgagttaactaaggcaagtgttaatttcagtgtgagttaagttgcgc 9384639  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 23284773 - 23284815
Alignment:
Q  139 gcgtgagttaactcacgcaagtgttaattacagcgtgagttaa 181  Q
    ||||||||||||||||||| ||||||||| |||||||||||||    
T  23284773 gcgtgagttaactcacgcaggtgttaattccagcgtgagttaa 23284815  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 188
Target Start/End: Original strand, 11561423 - 11561470
Alignment:
Q  141 gtgagttaactcacgcaagtgttaattacagcgtgagttaagttgcgc 188  Q
    ||||||||||||| | ||||||||||| || |||||||||||||||||    
T  11561423 gtgagttaactcaggaaagtgttaatttcaacgtgagttaagttgcgc 11561470  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 184
Target Start/End: Complemental strand, 43466787 - 43466745
Alignment:
Q  142 tgagttaactcacgcaagtgttaattacagcgtgagttaagtt 184  Q
    ||||||||||||| ||||| |||||| ||||||||||||||||    
T  43466787 tgagttaactcacacaagtattaatttcagcgtgagttaagtt 43466745  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 181
Target Start/End: Complemental strand, 34328681 - 34328644
Alignment:
Q  144 agttaactcacgcaagtgttaattacagcgtgagttaa 181  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  34328681 agttaactcacacaagtgttaattccagcgtgagttaa 34328644  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 9384722 - 9384678
Alignment:
Q  137 ctgcgtgagttaactcacgcaagtgttaattacagcgtgagttaa 181  Q
    |||||| |||||||||||| || |||||||| |||||||||||||    
T  9384722 ctgcgtaagttaactcacgtaattgttaattccagcgtgagttaa 9384678  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 165
Target Start/End: Original strand, 47441665 - 47441693
Alignment:
Q  137 ctgcgtgagttaactcacgcaagtgttaa 165  Q
    |||||||||||||||||||||||||||||    
T  47441665 ctgcgtgagttaactcacgcaagtgttaa 47441693  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 9875820 - 9875774
Alignment:
Q  137 ctgcgtgagttaactcacgcaagtgttaattacagcgtgagttaagt 183  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||    
T  9875820 ctgcgtgagttaactcaggcaagtgttaattccagcgtgagttaagt 9875774  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 9863453 - 9863498
Alignment:
Q  136 cctgcgtgagttaactcacgcaagtgttaattacagcgtgagttaa 181  Q
    ||||||||||||||||||| |||||||||||| |||||| ||||||    
T  9863453 cctgcgtgagttaactcacacaagtgttaattccagcgtcagttaa 9863498  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 9863519 - 9863568
Alignment:
Q  132 aattcctgcgtgagttaactcacgcaagtgttaattacagcgtgagttaa 181  Q
    |||||| |||||| |||||||||||||||||||||| ||| |||||||||    
T  9863519 aattccagcgtgatttaactcacgcaagtgttaattccagtgtgagttaa 9863568  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 181
Target Start/End: Complemental strand, 32879775 - 32879736
Alignment:
Q  142 tgagttaactcacgcaagtgttaattacagcgtgagttaa 181  Q
    |||||||||||||||| ||||||||| |||||||||||||    
T  32879775 tgagttaactcacgcatgtgttaatttcagcgtgagttaa 32879736  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 9863551 - 9863607
Alignment:
Q  132 aattcctgcgtgagttaactcacgcaagtgttaattacagcgtgagttaagttgcgc 188  Q
    |||||| | ||||||||||| | ||||||||||||| ||| ||||| ||||||||||    
T  9863551 aattccagtgtgagttaacttaggcaagtgttaattccagtgtgaggtaagttgcgc 9863607  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 26622233 - 26622273
Alignment:
Q  141 gtgagttaactcacgcaagtgttaattacagcgtgagttaa 181  Q
    ||||||||||||||||| ||||||||| ||||| |||||||    
T  26622233 gtgagttaactcacgcaggtgttaatttcagcgcgagttaa 26622273  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 26728211 - 26728251
Alignment:
Q  141 gtgagttaactcacgcaagtgttaattacagcgtgagttaa 181  Q
    ||||||||||||||||| ||||||||| ||||| |||||||    
T  26728211 gtgagttaactcacgcaggtgttaatttcagcgcgagttaa 26728251  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 31271897 - 31271851
Alignment:
Q  142 tgagttaactcacgcaagtgttaattacagcgtgagttaagttgcgc 188  Q
    |||||||||||| |||||| |||||| ||||||||||||||||||||    
T  31271897 tgagttaactcatgcaagtcttaattccagcgtgagttaagttgcgc 31271851  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 181
Target Start/End: Original strand, 13461231 - 13461269
Alignment:
Q  143 gagttaactcacgcaagtgttaattacagcgtgagttaa 181  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  13461231 gagttaactcacgcacgtgttaatttcagcgtgagttaa 13461269  T

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Target: scaffold0012 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 36154 - 36192
Alignment:
Q  142 tgagttaactcacgcaagtgttaattacagcgtgagtta 180  Q
    |||||||||||||||| ||||||||| ||||||||||||    
T  36154 tgagttaactcacgcacgtgttaattccagcgtgagtta 36192  T

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