View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19210_low_47 (Length: 241)
Name: NF19210_low_47
Description: NF19210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19210_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 112; Significance: 9e-57; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 114 - 225
Target Start/End: Original strand, 2357851 - 2357962
Alignment:
| Q |
114 |
cattataagtttctttgcttgttgtaactatttgtttggatacatgatttttcttacttttttctcgaggatccatttaaacttcatatgaaaaattata |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2357851 |
cattataagtttctttgcttgttgtaactatttgtttggatacatgatttttcttacttttttctcgaggatccatttaaacttcatatgaaaaattata |
2357950 |
T |
|
| Q |
214 |
agctttcataat |
225 |
Q |
| |
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|||||||||||| |
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| T |
2357951 |
agctttcataat |
2357962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 2357742 - 2357785
Alignment:
| Q |
6 |
ttcacatgcaagtaacttgagttagttacttcaagtgcaagttt |
49 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2357742 |
ttcacatgcaagtaacttgagttagttacttcaagtgcaagttt |
2357785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 28872252 - 28872295
Alignment:
| Q |
6 |
ttcacatgcaagtaacttgagttagttacttcaagtgcaagttt |
49 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||||||| |
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|
| T |
28872252 |
ttcacgtgcaagtaacttgagttagttacttcacatgcaagttt |
28872295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 28873697 - 28873740
Alignment:
| Q |
6 |
ttcacatgcaagtaacttgagttagttacttcaagtgcaagttt |
49 |
Q |
| |
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||||| ||||||||||||||||||||||||||| ||||||||| |
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|
| T |
28873697 |
ttcacgtgcaagtaacttgagttagttacttcacatgcaagttt |
28873740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 14685356 - 14685313
Alignment:
| Q |
6 |
ttcacatgcaagtaacttgagttagttacttcaagtgcaagttt |
49 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14685356 |
ttcacatgcaagtaacttgagttagttacttcaagtgcaagttt |
14685313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 35324101 - 35324144
Alignment:
| Q |
6 |
ttcacatgcaagtaacttgagttagttacttcaagtgcaagttt |
49 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35324101 |
ttcacatgcaagtaacttgagttagttacttcaagtgcaagttt |
35324144 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 27237295 - 27237252
Alignment:
| Q |
6 |
ttcacatgcaagtaacttgagttagttacttcaagtgcaagttt |
49 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27237295 |
ttcacatgcaagtaacttgagttagttacttcaagtgcaagttt |
27237252 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 12221740 - 12221773
Alignment:
| Q |
13 |
gcaagtaacttgagttagttacttcaagtgcaag |
46 |
Q |
| |
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|||||||||||||||||||||||||| ||||||| |
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| T |
12221740 |
gcaagtaacttgagttagttacttcatgtgcaag |
12221773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 5989440 - 5989397
Alignment:
| Q |
6 |
ttcacatgcaagtaacttgagttagttacttcaagtgcaagttt |
49 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5989440 |
ttcacatgcaagtaacttgagttagttacttcaagtgcaagttt |
5989397 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 5983485 - 5983442
Alignment:
| Q |
6 |
ttcacatgcaagtaacttgagttagttacttcaagtgcaagttt |
49 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5983485 |
ttcacatgcaagtaacttgatttagttacttcaagtgcaagttt |
5983442 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 7534173 - 7534130
Alignment:
| Q |
6 |
ttcacatgcaagtaacttgagttagttacttcaagtgcaagttt |
49 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
7534173 |
ttcacatataagtaacttgagttagttacttcaagtgcaagttt |
7534130 |
T |
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