View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19210_low_49 (Length: 240)
Name: NF19210_low_49
Description: NF19210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19210_low_49 |
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Alignment Details
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 53 - 132
Target Start/End: Original strand, 8280274 - 8280353
Alignment:
| Q |
53 |
aaaatacagtgactatgcgacggtggtggtggcggcggacaacgagggtgaacgaagaaaaagtgtggacggcgaattgg |
132 |
Q |
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| T |
8280274 |
aaaatacagtgactatgcgacggtggtggcggcggcggacaacgagggtgaatgaagaaaaagtgtggacggtgaattgg |
8280353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 28 - 132
Target Start/End: Complemental strand, 30441610 - 30441501
Alignment:
| Q |
28 |
aaaagaaaaaggagcagaaagtatgaaaatacagtgac--tatgcgacggtggtggtggcggcgga---caacgagggtgaacgaagaaaaagtgtggac |
122 |
Q |
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| T |
30441610 |
aaaagaaaaaggagcagaaagtacgaaaatacagtgacaatatgcgacggtggtggtggcggcggcggccaatgagggtgaatgaaggaaaagtgtggac |
30441511 |
T |
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| Q |
123 |
ggcgaattgg |
132 |
Q |
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|| ||||||| |
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| T |
30441510 |
ggtgaattgg |
30441501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 132
Target Start/End: Original strand, 13058131 - 13058231
Alignment:
| Q |
28 |
aaaagaaaaaggagcagaaagtatgaaaatacagtgactatgcgacggtggtggtggcggcggacaacgagggtgaacgaagaaaaagtgtggacggcga |
127 |
Q |
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||||||||||||||||||||||||||||||| |||||| || |||| ||||||||||| || ||||||||| |||| |||||||||||| | || |
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| T |
13058131 |
aaaagaaaaaggagcagaaagtatgaaaatagagtgacaat----atgtggcggtggcggcggccagtgagggtgaatgaaggaaaagtgtggaccgtga |
13058226 |
T |
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| Q |
128 |
attgg |
132 |
Q |
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||||| |
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| T |
13058227 |
attgg |
13058231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 26995129 - 26995244
Alignment:
| Q |
19 |
agagaaattaaaagaaaaaggagcagaaagtatgaaaatacagtg--actatgcgacggtggtggtggcggcggacaacgagggtgaacgaagaaaaagt |
116 |
Q |
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|||||||||||||||||||| | ||||||||||||||||| |||| |||| |||||||||||||||||| | | || |||||| ||| |||||| |
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| T |
26995129 |
agagaaattaaaagaaaaagaaacagaaagtatgaaaatatagtggagatatgtgacggtggtggtggcggctaccgatgaaggtgaatgaaagaaaagt |
26995228 |
T |
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| Q |
117 |
gtggacggcgaattgg |
132 |
Q |
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|||||||| ||||||| |
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| T |
26995229 |
gtggacggtgaattgg |
26995244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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