View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19210_low_51 (Length: 236)
Name: NF19210_low_51
Description: NF19210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19210_low_51 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 8994249 - 8994461
Alignment:
| Q |
1 |
atgggcaatgatcactttgataatcatgtgtggtttgtggaagctctgaacaactcagggattctctctcatgttgtttctgtttctgctgcggttgtgg |
100 |
Q |
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| T |
8994249 |
atgggtaatgatcactttgataatcatgtgtggtttgtggaagctctgaacaaatcagggattctctctcgtgttgtttctgtttctgctgcggttgtgg |
8994348 |
T |
|
| Q |
101 |
ataactgcctcctcaaccttgataattatgatgttagtgcttccatcaacgatgaaaatactaattatgttaaaaaggagcatttgattgatgttgacta |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8994349 |
ataactgcctcctcaaccttgatgattatgatgttagtgcttcaatcaatgatgaaaatactaataatgttaaaaaggagcatttgattgatgttgacta |
8994448 |
T |
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| Q |
201 |
ttcagttcttgtg |
213 |
Q |
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||||||||||||| |
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| T |
8994449 |
ttcagttcttgtg |
8994461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 9028906 - 9029118
Alignment:
| Q |
1 |
atgggcaatgatcactttgataatcatgtgtggtttgtggaagctctgaacaactcagggattctctctcatgttgtttctgtttctgctgcggttgtgg |
100 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
9028906 |
atgggtaatgatcactttgataatcatgtgtggtttgtggaagctctgaacaaatcagggattctctctcgtgttgtttctgtttctgctgcggttgtgg |
9029005 |
T |
|
| Q |
101 |
ataactgcctcctcaaccttgataattatgatgttagtgcttccatcaacgatgaaaatactaattatgttaaaaaggagcatttgattgatgttgacta |
200 |
Q |
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| T |
9029006 |
ataactgcctcctcaaccttgatgattatgatgttagtgcttcaatcaatgatgaaaatactaataatgttaaaaaggagcatttgattgatgttgacta |
9029105 |
T |
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| Q |
201 |
ttcagttcttgtg |
213 |
Q |
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||||||||||||| |
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| T |
9029106 |
ttcagttcttgtg |
9029118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 158 - 213
Target Start/End: Original strand, 9007172 - 9007227
Alignment:
| Q |
158 |
atactaattatgttaaaaaggagcatttgattgatgttgactattcagttcttgtg |
213 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9007172 |
atactaataatgttaaaaaggagcatttgattgatgttgactattcagttcttgtg |
9007227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 44884249 - 44884041
Alignment:
| Q |
1 |
atgggcaatgatcactttgataatcatgtgtggtttgtggaagctctgaacaactcagggattctctctcatgttgtttctgtttctgctgcggttgtgg |
100 |
Q |
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||||| |||| ||||||| ||||||||| ||||||||||||||||| ||||||||||||||||| |||| ||||||||| | |||||| || | ||| | |
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| T |
44884249 |
atgggaaatggtcacttttataatcatgcatggtttgtggaagctctcaacaactcagggattctgtctcgtgttgtttcagattctgcagctgctgttg |
44884150 |
T |
|
| Q |
101 |
ataactgcctcctcaaccttgataattatgatgttagtgcttccatcaacgatgaaaatac---taattatgttaaaaaggagcatttgattgatgttga |
197 |
Q |
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||||||||||||||||||| ||| |||||||| |||||||||| | || || |||||||| |||| |||||| ||||||||||||||||||||||| |
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| T |
44884149 |
ataactgcctcctcaacctcgatgattatgatattagtgcttcaagtaatgacgaaaatactaataataatgttatcaaggagcatttgattgatgttga |
44884050 |
T |
|
| Q |
198 |
ctattcagt |
206 |
Q |
| |
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|||||||| |
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|
| T |
44884049 |
ttattcagt |
44884041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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