View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19210_low_53 (Length: 230)
Name: NF19210_low_53
Description: NF19210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19210_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 35049079 - 35048899
Alignment:
| Q |
18 |
tttatgtactataattgtctgatttaaacgaagccgaaataacactttaaactatcatctatggtgttctaacatgcatatatcaagtagcatggactaa |
117 |
Q |
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| T |
35049079 |
tttatgtactataattgtctgatttaaacgaagccgaaataacactttaaattatcatctatggtgttctaacatgcatatatcaagtagcatggactaa |
35048980 |
T |
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| Q |
118 |
actctcatgtcttagtcgtcgcatatcgtggaaaacaccatatcttaaggaataattaaatgccacaaacacattcattat |
198 |
Q |
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| T |
35048979 |
actctcatgtcttagtcgtgtcatatcgtggaaaacaccatatcttaaggaataattaaatgccacaaacacattcattat |
35048899 |
T |
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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 89 - 192
Target Start/End: Original strand, 15418603 - 15418707
Alignment:
| Q |
89 |
acatgcatatatcaagtagcatggactaaactctcatgtcttagtcgtcgcatatcgtgg-aaaacaccatatcttaaggaataattaaatgccacaaac |
187 |
Q |
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| T |
15418603 |
acatacatatatcaagtagcatggactaaacttgcatgtcttagtcgttgcatacagtggaaaaacatcatatctttaagaacagttaaatgccacaaat |
15418702 |
T |
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| Q |
188 |
acatt |
192 |
Q |
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||||| |
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| T |
15418703 |
acatt |
15418707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 7891472 - 7891542
Alignment:
| Q |
18 |
tttatgtactataattgtctgatttaaacgaagccgaaataacactttaaactatcatctatggtgttcta |
88 |
Q |
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| T |
7891472 |
tttatgtactataattgtccgatttaaacaaagatgaaataaaactataaattatcacctatcgttttcta |
7891542 |
T |
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