View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19210_low_55 (Length: 228)
Name: NF19210_low_55
Description: NF19210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19210_low_55 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 20 - 208
Target Start/End: Complemental strand, 12924159 - 12923971
Alignment:
| Q |
20 |
ctgttagtaggtgttgaaaatgtatattcgaaagccagtagttttctttggttatgttattatgattcaattgtgctcatagtttgtgtactcgtatatt |
119 |
Q |
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| T |
12924159 |
ctgttagtaggtgttgaaaatgtatattcgaaagccagtagttttctttgattatgttattatgattcaattgtgctcatagtttgtgtactcatatatt |
12924060 |
T |
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| Q |
120 |
tttctttgggtctatacctcattttattgatggaagtgttatgtaggcatagttgcttaatcatctcagcaagccagttcttatcaagc |
208 |
Q |
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| T |
12924059 |
tttctttgggtccatacctcattttattgatggaagtgttatgtaggcatagttgcttaatcatctcagcaagccagttcttatcaagc |
12923971 |
T |
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Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 21 - 206
Target Start/End: Original strand, 30791500 - 30791686
Alignment:
| Q |
21 |
tgttagtaggtgttgaaaatgtatattcgaaagccagtagttttctttggttatgttattatgattcaattgtgctcatagtttgtgtactcgt-atatt |
119 |
Q |
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|||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||| | ||||| |
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| T |
30791500 |
tgttagtaggtgttgaaaatgtatattccaaaaccaatagttttctttggttatgttattatgattcaattgtgttcatagcttgtgtactcatgatatt |
30791599 |
T |
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| Q |
120 |
tttctttgggtctatacctcattttattgatggaagtgttatgtaggcatagttgcttaatcatctcagcaagccagttcttatcaa |
206 |
Q |
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|||||||||||||||| ||||||| ||||||||||||||| ||| ||||||||| |||| | | |||| ||||| | |||||||||| |
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| T |
30791600 |
tttctttgggtctatatctcatttgattgatggaagtgttgtgttggcatagtttcttagttacctcaacaagctaattcttatcaa |
30791686 |
T |
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